View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9311-LTR4-TNT-insertion-3 (Length: 511)
Name: F9311-LTR4-TNT-insertion-3
Description: F9311-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9311-LTR4-TNT-insertion-3
[» ] scaffold0068 (1 HSPs)
Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 10 - 501
Target Start/End: Original strand, 13878074 - 13878565
Alignment:
Q
10
atataggaggctggatgtgggggtacaaaatggacctctctagtggtagggttccaaagaattaagcttagggtataatcataatcatattccaaacata
109
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13878074
atataggaggctggatgtgggggtacaaaatggacctctctagtggtagggttccaaagaattaagcttagggtataatcataatcatattccaaacata
13878173
T
Q
110
aaataccattacaatgaccgtatattttgattattcgtatggggatgtttttcggaaagagggatttgatgaggttgggtgttggtgttgggtgttgagg
209
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13878174
aaataccattacaatgaccgtatattttgattattcgtatggggatgtttttcggaaagagggatttgatgaggttgggtgttggtgttgggtgttgagg
13878273
T
Q
210
taaagagagaagcattaggtgggtttctaggcaagttgattcaatgggcttgtcaaagatcctgtcattgtggttatgggttttagggcatgtttctttt
309
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13878274
taaagagagaagcattaggtgggtttctaggcaagttgattcaatgggcttgtcaaagatcctgtcattgtggttatgggttttagggcatgtttctttt
13878373
T
Q
310
gtatactgtttaatgataacgaaacgatggtggtcatcatcatcattagacatatggatatgcatgttcctaataacaaatttagggttcttgaaaagaa
409
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13878374
gtatactgtttaatgataacgaaacgatggtggtcatcatcatcattagacatatggatatgcatgttcctaataacaaatttagggttcttgaaaagaa
13878473
T
Q
410
tgttccaagatctttgaacacatttaaaacgcataagtgactttgcaggcaatctaactaatatctctgcctccaaatctccccctagaatt
501
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13878474
tgttccaagatctttgaacacatttaaaacgcataagtgactttgcaggcaatctaactaatatctctgcctccaaatctccccctagaatt
13878565
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 19071467 - 19071410
Alignment:
Q
431
atttaaaacgcataagtgactttgcaggcaatctaactaatatctctgcctccaaatc
488
Q
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
T
19071467
atttaaaacgcataagtgactttgcaggaaatctaactaatatctctgcctccaaatc
19071410
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 19119357 - 19119300
Alignment:
Q
431
atttaaaacgcataagtgactttgcaggcaatctaactaatatctctgcctccaaatc
488
Q
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
T
19119357
atttaaaacgcataagtgactttgcaggaaatctaactaatatctctgcctccaaatc
19119300
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0068 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 59015 - 58953
Alignment:
Q
431
atttaaaacgcataagtgacttt-----gcaggcaatctaactaatatctctgcctccaaatc
488
Q
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
T
59015
atttaaaacgcataagtgactttcacttgcaggcaatctaactaatatctcttcctccaaatc
58953
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 488
Target Start/End: Original strand, 21802924 - 21802987
Alignment:
Q
431
atttaaaacgcataagtgactttgc------aggcaatctaactaatatctctgcctccaaatc
488
Q
||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||
T
21802924
atttaaaacgcataagtgactttgcacttgcaggcaatccaactaatatctcttcctccaaatc
21802987
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 34169256 - 34169207
Alignment:
Q
400
ttgaaaagaatgttccaagatctttgaacacatttaaaacgcataagtga
449
Q
||||| |||||||||||||||| |||||| ||||| |||||||| |||||
T
34169256
ttgaatagaatgttccaagatcgttgaacgcatttgaaacgcattagtga
34169207
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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