View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9312-LTR4-TNT-insertion-1 (Length: 336)
Name: F9312-LTR4-TNT-insertion-1
Description: F9312-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9312-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 7 - 326
Target Start/End: Complemental strand, 43284939 - 43284620
Alignment:
| Q |
7 |
aaaatgcgttgtaatttttgtctataaccagatccaaaataatgccattttcgctactaaagttgctgttcggactgagaaaagggaagaaagaagccaa |
106 |
Q |
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| T |
43284939 |
aaaatgcgttgtaatttttgtctataaccagatccaaaataatgccattttcgctactaaagttgctgttcggactgagaaaagggaagaaagaagccaa |
43284840 |
T |
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| Q |
107 |
gggtaattgtcaggggtatttttagtattttctcacgtgtctggttttattaagggcaaaatggtcattttgggcataaacgctgagtcatcaaagtcct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43284839 |
gggtaattgtcaggggtatttttagtattttctcacgtgtctggttttattaagggcaaaatggtcattttgggcataaacgctgagtcatcaaagtcct |
43284740 |
T |
|
| Q |
207 |
tacccagtcagctaatgccatgtcattgccacgtaagtaatcacttgccacatgggcgttcagatgtaattaggaccaaatttgggaggattagtacctg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43284739 |
tacccagtcagctaatgccatgtcattgccacgtaagtaatcacttgccacatgggcgttcagatgtaattaggaccaaatttgggaggattagtacctg |
43284640 |
T |
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| Q |
307 |
cagggtctaaaattcaattg |
326 |
Q |
| |
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|||||||||||||||||||| |
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| T |
43284639 |
cagggtctaaaattcaattg |
43284620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 4140246 - 4140191
Alignment:
| Q |
234 |
gccacgtaagtaatcacttgccacatgggcgttcagatgtaattaggaccaaattt |
289 |
Q |
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| T |
4140246 |
gccacgtaagtaatcacttgccacatgtgcaatctgaagtaattaagaccaaattt |
4140191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 289
Target Start/End: Original strand, 6345534 - 6345635
Alignment:
| Q |
188 |
gctgagtcatcaaagtccttacccagtcagctaatgccatgtcattgccacgtaagtaatcacttgccacatgggcgttcagatgtaattaggaccaaat |
287 |
Q |
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||||||||| ||||||| | |||||||||| | ||||| ||||||||||| | ||||||||| |||||||| ||| | ||| ||||||||||| |||| |
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| T |
6345534 |
gctgagtcagcaaagtcttgacccagtcagatggtgccacgtcattgccacatcagtaatcacgtgccacataggcaataagaagtaattaggactaaat |
6345633 |
T |
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| Q |
288 |
tt |
289 |
Q |
| |
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|| |
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| T |
6345634 |
tt |
6345635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 289
Target Start/End: Complemental strand, 4970327 - 4970227
Alignment:
| Q |
189 |
ctgagtcatcaaagtccttacccagtcagctaatgccatgtcattgccacgtaagtaatcacttgccacatgggcgttcagatgtaattaggaccaaatt |
288 |
Q |
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|||||||| ||||||| | |||||||||| | ||||| ||||||||||| | ||||||||| |||||||| ||| | ||| ||||||||||| ||||| |
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| T |
4970327 |
ctgagtcagcaaagtcttgacccagtcagatggtgccacgtcattgccacatcagtaatcacgtgccacataggcaataagaagtaattaggactaaatt |
4970228 |
T |
|
| Q |
289 |
t |
289 |
Q |
| |
|
| |
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|
| T |
4970227 |
t |
4970227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 3232439 - 3232496
Alignment:
| Q |
202 |
gtccttacccagtcagctaatgccatgtcattgccacgtaagtaatcacttgccacat |
259 |
Q |
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||||||||||||||||||| |||| |||| ||||| |||||||||||||| ||||| |
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| T |
3232439 |
gtccttacccagtcagctagagccacgtcagtgccatataagtaatcacttgacacat |
3232496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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