View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9312-LTR4-TNT-insertion-2 (Length: 454)
Name: F9312-LTR4-TNT-insertion-2
Description: F9312-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9312-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 41304708 - 41304917
Alignment:
| Q |
8 |
ctaaagcacccgcaatgaattttaaaatgagtttcttgtccaaatatatttccacacaagtacgggaaaattggctcatagattgactagaagttaagtg |
107 |
Q |
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| T |
41304708 |
ctaaagcacccgcaatgaattttaaaatgagtttcttgtccaaatatatttccacacaagtacgggaaaattggctcatagattgactagaagttaagtg |
41304807 |
T |
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| Q |
108 |
gtccaccttctacatattacatatgcannnnnnngtataaatgacattaaaatacttaaaaagtttcttataattaagataacatgtagtaataaactta |
207 |
Q |
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| T |
41304808 |
gtccaccttctacatattacatatgcatttttttgtataaatgacattaaaatacttaaaaagtttcttataattaagataacatgtagtaataaactta |
41304907 |
T |
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| Q |
208 |
aaatgtgatc |
217 |
Q |
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| T |
41304908 |
aaatgtgatc |
41304917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 292 - 444
Target Start/End: Original strand, 41304992 - 41305144
Alignment:
| Q |
292 |
gtgtgtgtgtatatatcattggattttcaattatactttcttaaaataaatattttctaatataaaatttaaaggttggagcaaaagaaatggttcagtt |
391 |
Q |
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| T |
41304992 |
gtgtgtgtgtatatatcattggattttcaattatactttcttaaaataaatattttctaatataaaatttaaaggttggagcaaaagaaatggttcagtt |
41305091 |
T |
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| Q |
392 |
aaaccgatttgcaccacaccagtttttgatggtttgttgcaaaagcttaatta |
444 |
Q |
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| T |
41305092 |
aaaccgatttgcaccacaccagtttttgatggtttgttgcaaaagcttaatta |
41305144 |
T |
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