View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9312-LTR4-TNT-insertion-6 (Length: 543)
Name: F9312-LTR4-TNT-insertion-6
Description: F9312-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9312-LTR4-TNT-insertion-6 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 8 - 533
Target Start/End: Complemental strand, 11062060 - 11061535
Alignment:
| Q |
8 |
cgaagttgctgagaaaaagattgattctagcatctgaattgagagggaaaggaagatgaaacatggttatgaaaaacgcaaagttcccagcgaacaagct |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11062060 |
cgaagttgctgagaaaaagattgattctagcatctgaattgagagggaaaggaagatgaaacatggttatgaaaaacgcaaagttcccagcgaacaagct |
11061961 |
T |
|
| Q |
108 |
tctcttgatcattctcagagaaactcaagtgtcaacaaaactgcaactgataaagaagcaatgttgaaaattagcaaaaagcgtcgagagcacatgaaga |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11061960 |
tctcttgatcattctcagagaaactcaagtgtcaacaaaactgcaactgataaagaaacaatgttgaaaattagcaaaaagcgtcgagagcacatgaaga |
11061861 |
T |
|
| Q |
208 |
tcaagtctgcaagcgcacattcccatataggggatgatgtgtcaaaggtaaatcccttacgactattcctttttcttgtgtcatctcaccattcctttta |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11061860 |
tcaagtctgcaagcgcacattcccatataggggatgatgtgtcaaaggtaaatcccttacgactattcctttttcttgtgtcatctcaccattcctttta |
11061761 |
T |
|
| Q |
308 |
tcagcttctgtcctaattttcagggtactgaagacagtaatgctgactttgggaaacaaccgacaccttcatcaactttcagaccatcaatgacaactat |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11061760 |
tcagcttctgtcctaattttcagggtactgaagacagtaatgctgactttgggaaacaaccgacaccttcatcaactttcagaccatcaatgacaactat |
11061661 |
T |
|
| Q |
408 |
ctctgaggatcaaatagcagtccaccctcgtcttgaaaaagataatgtcaatcatgaagaagatgatgcagaaaaagacgaagtctcgtctccgttcgaa |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11061660 |
ctctgaggatcaaatagcagtccaccctcgtcttgaaaaagataatgtcaatcatgaagaagatgatgcagaaaaagacgaagtctcgtctccgttcgaa |
11061561 |
T |
|
| Q |
508 |
ggtgagaaaggtcaggtgcctcatta |
533 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
11061560 |
ggtgagaaaggtcaggtgcctcatta |
11061535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 54 - 475
Target Start/End: Original strand, 20186125 - 20186545
Alignment:
| Q |
54 |
gaaaggaagatgaaacatggttatgaaaaacgcaaagttcccagcgaacaagcttctcttgatcattctcagagaaactcaagtgtcaacaaaactgcaa |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20186125 |
gaaaggaagatgaaacatggttatgaaaaacgcaaagttcccagcaaacaagactcttgtgatcattctcagagaaactcaagtgtcaacaaaactgcaa |
20186224 |
T |
|
| Q |
154 |
ctgataaagaagcaatgttgaaaattagcaaaaagcgtcgagagcacatgaagatcaagtctgcaagcgcacattcccatataggggatgatgtgtcaaa |
253 |
Q |
| |
|
||| ||||| |||| |||| | ||| | ||| | |||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
20186225 |
tcgatgaagaaacaattgtgaagagtagtagaaaacatcgagagcgcagaaagatcaagtctttaagcgcacattcccatataggggatgatgtgtcaaa |
20186324 |
T |
|
| Q |
254 |
ggtaaatcccttacgactattcctttttcttgtgtcatctcaccattccttttatcagcttctgtcctaattttcagggtactgaagacagtaatgctga |
353 |
Q |
| |
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|||||||||| | ||||||| |||||| |||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
20186325 |
ggtaaatcccgtccgactatgcctttt-cttgagtcatctcaccagtccttttatcatcttctgtcctaattttcagggtactgaagacagtaatgctaa |
20186423 |
T |
|
| Q |
354 |
ctttgggaaacaaccgacaccttcatcaactttcagaccatcaatgacaactatctctgaggatcaaatagcagtccaccctcgtcttgaaaaagataat |
453 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| ||||||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||| |
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| T |
20186424 |
ctttgggaaacaaccgacgccttcatccactttcaaaccatcagtgacaactatctatgaggatcaaatagcagtcgaccctcgtcttcaaaaatataat |
20186523 |
T |
|
| Q |
454 |
gtcaatcatgaagaagatgatg |
475 |
Q |
| |
|
||||||| | |||||||||||| |
|
|
| T |
20186524 |
gtcaatcctcaagaagatgatg |
20186545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 54 - 475
Target Start/End: Complemental strand, 22149866 - 22149446
Alignment:
| Q |
54 |
gaaaggaagatgaaacatggttatgaaaaacgcaaagttcccagcgaacaagcttctcttgatcattctcagagaaactcaagtgtcaacaaaactgcaa |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22149866 |
gaaaggaagatgaaacatggttatgaaaaacgcaaagttcccagcaaacaagactcttgtgatcattctcagagaaactcaagtgtcaacaaaactgcaa |
22149767 |
T |
|
| Q |
154 |
ctgataaagaagcaatgttgaaaattagcaaaaagcgtcgagagcacatgaagatcaagtctgcaagcgcacattcccatataggggatgatgtgtcaaa |
253 |
Q |
| |
|
||| ||||| |||| |||| | ||| | ||| | |||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
22149766 |
tcgatgaagaaacaattgtgaagagtagtagaaaacatcgagagcgcagaaagatcaagtctttaagcgcacattcccatataggggatgatgtgtcaaa |
22149667 |
T |
|
| Q |
254 |
ggtaaatcccttacgactattcctttttcttgtgtcatctcaccattccttttatcagcttctgtcctaattttcagggtactgaagacagtaatgctga |
353 |
Q |
| |
|
|||||||||| | ||||||| |||||| |||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
22149666 |
ggtaaatcccgtccgactatgcctttt-cttgagtcatctcaccagtccttttatcatcttctgtcctaattttcagggtactgaagacagtaatgctaa |
22149568 |
T |
|
| Q |
354 |
ctttgggaaacaaccgacaccttcatcaactttcagaccatcaatgacaactatctctgaggatcaaatagcagtccaccctcgtcttgaaaaagataat |
453 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| ||||||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||| |
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|
| T |
22149567 |
ctttgggaaacaaccgacgccttcatccactttcaaaccatcagtgacaactatctatgaggatcaaatagcagtcgaccctcgtcttcaaaaatataat |
22149468 |
T |
|
| Q |
454 |
gtcaatcatgaagaagatgatg |
475 |
Q |
| |
|
||||||| | |||||||||||| |
|
|
| T |
22149467 |
gtcaatcctcaagaagatgatg |
22149446 |
T |
|
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