View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9313-LTR4-TNT-insertion-1 (Length: 202)
Name: F9313-LTR4-TNT-insertion-1
Description: F9313-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9313-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 7319709 - 7319879
Alignment:
| Q |
9 |
gtaagaactatatatatcaagggagaactggagtaagccaatgcgattgtcaaggtgtttctaagaaattatttctaatagcgatccaaaaacgaacatc |
108 |
Q |
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| T |
7319709 |
gtaagaactatatatattaagggagaactggagtaagccaatgcgattgtcaaggtgtttctaagaaattatttctaatagcgatccaaaaacgaacatc |
7319808 |
T |
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| Q |
109 |
atatgaaacaaattcaagttagccaacaaatgcaagagttaaatcatctagcattgataaaaggttaatta |
179 |
Q |
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| T |
7319809 |
atatgaaacaaattcaagttagccaacaaatgcaagagttaaatcatctagcattgataaaaggttaatta |
7319879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 2494509 - 2494428
Alignment:
| Q |
80 |
tttctaatagcgatccaaaaacgaacatcatatgaaacaaattcaagttagccaacaaatgcaagagttaaatcatctagca |
161 |
Q |
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| T |
2494509 |
tttctaagagtgatccaaaaactagcatcatatgaaacaaagtcaagttaaccaacaaatgcaagagtcaaatcatctagca |
2494428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 18756971 - 18756924
Alignment:
| Q |
91 |
gatccaaaaacgaacatcatatgaaacaaattcaagttagccaacaaa |
138 |
Q |
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| T |
18756971 |
gatccaaaaactagcatcatatgaaacaagttcaagttaaccaacaaa |
18756924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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