View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9313-LTR4-TNT-insertion-10 (Length: 226)
Name: F9313-LTR4-TNT-insertion-10
Description: F9313-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9313-LTR4-TNT-insertion-10 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 27761354 - 27761564
Alignment:
| Q |
8 |
gaatccaatcctataaaatgaagtagttttaaattcttttgaaggagaattttgctatgaattgttattctgcacttggggcatctgattcacaccaaag |
107 |
Q |
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| T |
27761354 |
gaatccaatcctataaaatgaagtagttttaaattcttttgaaggagaattttgctatgaattgttattctgcacttggggcatctgattcacaccaaag |
27761453 |
T |
|
| Q |
108 |
aatattcaatacaaaatcatgactcattttttcaataatnnnnnnnntggttcaaataaataaaatattataacaaattacatattgacttttcttttat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27761454 |
aatattcaatacaaaatcatgactcattttttcaataataaaaaaaatggttcaaataaataaaatattataacaaattacatattgacttttcttttat |
27761553 |
T |
|
| Q |
208 |
tttagtgatta |
218 |
Q |
| |
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||||||||||| |
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|
| T |
27761554 |
tttagtgatta |
27761564 |
T |
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