View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9313-LTR4-TNT-insertion-11 (Length: 536)
Name: F9313-LTR4-TNT-insertion-11
Description: F9313-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9313-LTR4-TNT-insertion-11 |
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Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 7 - 528
Target Start/End: Complemental strand, 24456815 - 24456294
Alignment:
| Q |
7 |
atcgtggtcaatacagcaagaatacggatctctctgagacagttgctgaagcaacatctatattgtcttatgtggaaccctcactggtccttccatttgt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456815 |
atcgtggtcaatacagcaagaatacggatctctctgagacagttgctgaagcaacatctatattgtcttatgtggaaccctcactggtccttccatttgt |
24456716 |
T |
|
| Q |
107 |
ggcatctaggtttcaaatggcccttgagacggttagttgtgttgattgaatatttttcatggtagaatttcagaaatcatatgtagtcagtggaattaca |
206 |
Q |
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| T |
24456715 |
ggcatctaggtttcaaatggcccttgagacggttagttgtgttgattgaatatttttcatggtagaatttcagaaatcatatgtagtcagtggaattaca |
24456616 |
T |
|
| Q |
207 |
aagaataatattttcttcttggtaatatgtccactgagggatactctttaaaagtatactgtattgtgttaatttgtctttctgaccatattcattttgc |
306 |
Q |
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| T |
24456615 |
aagaataatattttcttcttggtaatatgtccactgagggatactctttaaaagtatactgtattgtgttaatttgtctttctgaccatattcattttgc |
24456516 |
T |
|
| Q |
307 |
ctggccagatgactgccacccaccagttgaaaattgcagttatgtctggcatttgttgggcgctcactattttatacatctgtatcggcttcctccatga |
406 |
Q |
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| T |
24456515 |
ctggccagatgactgccacccaccagttgaaaattgcagttatgtctggcatttgttgggcgctcactattttatacatctgtatcggcttcctccatga |
24456416 |
T |
|
| Q |
407 |
aacaagttgatcttggcggtggtgatgaagcattcattgatcttgtgggggtttcattatctaatgcattacttggcatggatgctaatgaccctccgaa |
506 |
Q |
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| T |
24456415 |
aacaagttgatcttggcggtggtgatgaagcattcattgatcttgtgggggtttcattatctaatgcattacttggcatggatgctaatgaccctccgaa |
24456316 |
T |
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| Q |
507 |
aactttagctaccatgcaatta |
528 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
24456315 |
aactttagctaccatgcaatta |
24456294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 7 - 528
Target Start/End: Complemental strand, 24474228 - 24473705
Alignment:
| Q |
7 |
atcgtggtcaatacagcaagaatacggatctctctgagacagttgctgaagcaacatctatattgtcttatgtggaaccctcactggtccttccatttgt |
106 |
Q |
| |
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||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24474228 |
atcgtggtcaatacagcaagaatgagcatctctctgagacagttgctgcagcaacatctatattgtcttatgtggaaccctcactggtccttccatttgt |
24474129 |
T |
|
| Q |
107 |
ggcatctaggtttcaaatggcccttgagacggttagttgtgttgattgaatatttttcatggtagaatttcagaaatcatatgtagtcagtggaattaca |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
24474128 |
ggcatctaggtttcaaatggcccttgagacggttagttgtgttgtttgaatatttttcatggtagaatttcagaaatcatatgtggtcagtggcattaca |
24474029 |
T |
|
| Q |
207 |
aagaataatattttcttcttggtaatatgtccactgagggatactctttaaaagtatactgtattgtgttaatttgtctttctgaccatattcattttgc |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24474028 |
aagaataatattttcttcttggtaatatgtccactgagggatactctttaaaagtatactgtattgtgttaatttgtctttctgaccatattcattttgc |
24473929 |
T |
|
| Q |
307 |
ctggccagatgactgccacccaccagttgaaaattgcagttatgtc--tggcatttgttgggcgctcactattttatacatctgtatcggcttcctccat |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24473928 |
ctggccagatgactgccacccaccagttgaaaattgcagttatgtctgtggcatttgttgggcgctcactattttatacatctgtatcggcttcctccat |
24473829 |
T |
|
| Q |
405 |
gaaacaagttgatcttggcggtggtgatgaagcattcattgatcttgtgggggtttcattatctaatgcattacttggcatggatgctaatgaccctccg |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24473828 |
gaaacaagttgatcttggcggtggtgatgaagcattcattgatcttgtgggggtttcattatctaatgcattacttggcatggatgctaatgaccctccg |
24473729 |
T |
|
| Q |
505 |
aaaactttagctaccatgcaatta |
528 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
24473728 |
aaaactttagctaccatgcaatta |
24473705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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