View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9313-LTR4-TNT-insertion-12 (Length: 429)
Name: F9313-LTR4-TNT-insertion-12
Description: F9313-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9313-LTR4-TNT-insertion-12 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 10 - 419
Target Start/End: Complemental strand, 39224774 - 39224365
Alignment:
| Q |
10 |
tggctaggtgttaattttcctaactagctagtttgtgttatttgagaattttgaagattttgtttaactatttattagctagagttggacctgttcnnnn |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39224774 |
tggctaggtgttaattttcctaactagctagtttgtgttatttgagaattttgaagattttgtttaactatttattagctagagttggacctgttcaaaa |
39224675 |
T |
|
| Q |
110 |
nnntaaaactatagttggtagaggggattcaattactgttaacacactgcaatacaatttaggattgagattgaagttgaattatgaatgcataccttgg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39224674 |
aaataaaactatagttggtagaggggattcaattactgttaacacactgcaatacaatttaggattgagattgaagttgaattatgaatgcataccttgg |
39224575 |
T |
|
| Q |
210 |
cttggcttccctttactacttgtctagaatttccacaaaaaattgtttagtttctttcttttatcaattagaaatattaaagacaaaaagcaaaaggaaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39224574 |
cttggcttccctttactacttgtctagaatttccacaaaaaattgtttagtttttttcttttatcaattagaaatattaaagacaaaaagcaaaaggaaa |
39224475 |
T |
|
| Q |
310 |
taccccttcatgccatttttctcaacacacatgnnnnnnnnnnnnttgtgtgtctcccctttgttttgtatttttctcaacaccnnnnnnnnggaatttt |
409 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39224474 |
taccccttcatgccatttttctcaacacacatgctctctctctctttgtgtgtctcccctttgttttgtatttttctcaacaccttttttttggaatttt |
39224375 |
T |
|
| Q |
410 |
tattcgaatt |
419 |
Q |
| |
|
|||||||||| |
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|
| T |
39224374 |
tattcgaatt |
39224365 |
T |
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