View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9313-LTR4-TNT-insertion-3 (Length: 507)
Name: F9313-LTR4-TNT-insertion-3
Description: F9313-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9313-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 12 - 497
Target Start/End: Complemental strand, 35289726 - 35289241
Alignment:
| Q |
12 |
cctgtccacctttggccgacaaggtttggtgcaacgcatgtttttcacgctacgtgtgtttgggtctgtacaggtggccaaaaaatcgttgctgatttgg |
111 |
Q |
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| T |
35289726 |
cctgtccacctttggccgacaaggtttggtgcaacgcatgtttttcacgctacgtgtgtttgggtctgtacaggtggccaaaaaatcgttgctgatttgg |
35289627 |
T |
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| Q |
112 |
acaaacaaagatatgtaataacagccataaaggctaaagcatgaagggaaattaattgagaaggaatataagtttatctcttcattactccttatctacc |
211 |
Q |
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| T |
35289626 |
acaaacaaagatatgtaataacagccataaaggctaaagcatgaagggaaattaattgagaaggaatataagtttatctcttcattactccttatctacc |
35289527 |
T |
|
| Q |
212 |
cctcattctttatcctcttcaccgcagcctttaaggtttggaaggattaaattacgatccaaaatttaagatatagttttcacttttcaaatgataaaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35289526 |
cctcattctttatcctcttcaccgcagcctttaaggtttggaaggattaaattacgatccaaaatttaagatatagttttcacttttcaaatgataaaaa |
35289427 |
T |
|
| Q |
312 |
tattcaagtgttacaataatataaaacttcattatacttttgtatatggagtttgagttatgtggattttgatccatattannnnnnncattcgacgagt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35289426 |
tattcaagtgttacaataatataaaacttcattatacttttgtatatggagtttgagttatgtggattttgatccatattatttttttcattcgacgagt |
35289327 |
T |
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| Q |
412 |
gtttcgcgtgttctatttaattttaaaatttgaaaccttcaatatatttttgaaggtttttataagatatttataccgtttgaatt |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35289326 |
gtttcgcgtgttctatttaattttaaaatttgaaaccttcaatatatttttgaaggtttttataagatatttataccgtttgaatt |
35289241 |
T |
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