View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9313-LTR4-TNT-insertion-4 (Length: 715)
Name: F9313-LTR4-TNT-insertion-4
Description: F9313-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9313-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 11 - 708
Target Start/End: Original strand, 8568204 - 8568901
Alignment:
| Q |
11 |
ccttaaccaactcaaaatcatcaagatccttttaattatttccccaataatttgctgctgaatccagnnnnnnntgaataggaggcagcaaagagcattc |
110 |
Q |
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| T |
8568204 |
ccttaaccaactcaaaatcatcaagatcctcttaattatttccccaataatttgctgctgaatccagaaaaaaatgaataggaggcagcaaagagcattc |
8568303 |
T |
|
| Q |
111 |
aaagttttgttttggattatgggaatatgtttaacatgttatcttgcaggaccacctttgttttgggcactcaatgacacttttagttctgttttttctt |
210 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
8568304 |
aaagttttgttttggattatgggaatatgtctaacatgttatcttgcaggaccacctttgttttgggcactcaatgacactcttagttctgtttcttctt |
8568403 |
T |
|
| Q |
211 |
cttgtcctccttgtcattgtgattgttctcttcaaccccttctttccatcccagaaggtttcgttttctttctcctttaaatctctannnnnnnnnnnnc |
310 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8568404 |
cttgtcctccttgtcattgtgattgttctcttcaaccccttctttccatcccagaaggtttcgttttctttctcctttaaatctctattttttttttttc |
8568503 |
T |
|
| Q |
311 |
attaaaaagattatgtgtttaaataagaaatgacaaataatgtgttttgtttcttaaataatgatgttttgtttagaatgagactcataggtacctcata |
410 |
Q |
| |
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| T |
8568504 |
attaaaaagattatgtgtttaaataagaaatgacaaataatgtgttttgtttcttaaataatgatgttttgtttagaatgagactcataggtacctcata |
8568603 |
T |
|
| Q |
411 |
atggcgcaggtttaaataacttcacttatattaatatgtaaattcttgtttaagccttgagtttttctcgactttgttgaacccacatgactcaattcac |
510 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8568604 |
atggcgcaggtttaaataacttcacttatattaatatgtaaattcttgtttaagccttgagtttttctcgactttgttgaacccacatgactcaattcac |
8568703 |
T |
|
| Q |
511 |
gtaaactttacgagtgtaaaagaaaacatagagaattagagttcactcttactgctagtccatattggaattttagggaactcatttattgggaatgata |
610 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8568704 |
gtaaactttacgagtgtaaaagaaaacatagagaattagagttcactcttactgctagtccatattggaattttagggaactcatttattgggaatgata |
8568803 |
T |
|
| Q |
611 |
tgtaacatatgttgatacattggataataaatttcatccgggaaattttatgcaactttgttaatcatagttttaaattgcattatcaactgcaattg |
708 |
Q |
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| T |
8568804 |
tgtaacatatgttgatacattggataataaatttcatccgggaaattttatgcaactttgttaatcatagttttaaattgcattatcaactgcaattg |
8568901 |
T |
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