View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9313-LTR4-TNT-insertion-5 (Length: 513)
Name: F9313-LTR4-TNT-insertion-5
Description: F9313-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9313-LTR4-TNT-insertion-5 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 10 - 504
Target Start/End: Original strand, 49514371 - 49514865
Alignment:
| Q |
10 |
aaaacatttgtaaatgcttagttatgctgtatgataataattggttgattttaactccttccaatactcaggtacctacgaactacgtagtcaaagattt |
109 |
Q |
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| T |
49514371 |
aaaacatttgtaaatgcttagttatgctgtatgataataattggttgattttaactccttccaatactcaggtacctacgaactacgtagtcaaagattt |
49514470 |
T |
|
| Q |
110 |
cggtcctcgagcacttcagcacagtaaagttgattttgattgggaggatgatgatccctttcgcaaaaggaccttgagtcgaaaatttactgatgagcag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49514471 |
cggtcctcgagcacttcagcacagtaaagttgattttgattgggaggatgatgatccctttcgcaaaaggaccttgagtcgaaaatttactgatgagcag |
49514570 |
T |
|
| Q |
210 |
gtcagcactgccctagcctatggtaaacatctgatggataacataaaaaatggggtaaaatatagtattgtaattcactatgttaattgtggaaatccaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49514571 |
gtcagcactgccctagcctatggtaaacatctgatggataacataaaaaatggggtaaaatatagtattgtaattcactatattaattgtggaaatccaa |
49514670 |
T |
|
| Q |
310 |
gcttgcatcaccatgatatcaggtcttggtttcttaagacaataggaaatgcagaaacaaggaaatacatggtctgggaaatttgagagtcctctcccga |
409 |
Q |
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| T |
49514671 |
gcttgcatcaccatgatatcaggtcttggtttcttaagacaataggaaatgcagaaacaaggaaatacatggtctgggaaatttgagagtcctctcccga |
49514770 |
T |
|
| Q |
410 |
aagtctcaactgtttctagcctaactccgtagtttccactcaccagatacccccaacaactgaatcacacaccaactagcctctgatactaattg |
504 |
Q |
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| T |
49514771 |
aagtctcaactgtttctagcctaactccgtagtttccactcaccagatacccccaacaactgaatcacacaccaactagcctctgataccaattg |
49514865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 391
Target Start/End: Original strand, 27745961 - 27746335
Alignment:
| Q |
23 |
atgcttagttatgctgtatgataataattggttgattttaactccttccaatactcaggtacctacgaactacgtagtcaaagatttcggtcctcgagca |
122 |
Q |
| |
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||||||| ||||||| |||||||||||||||| ||||| |||||| |||| ||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
27745961 |
atgcttatttatgctctatgataataattggtatattttgactcctatcaatgctcaggtacctgcaaactacgtagtcaaagatttcggtcctcgagca |
27746060 |
T |
|
| Q |
123 |
cttcagcacagtaaagttgattttgattgggaggatgatgatccctttcgcaaaaggaccttgagtcgaaaatttactgatgagcaggtcagcactgccc |
222 |
Q |
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|||||||||||||||||||||||| |||||| |||||||| ||| ||||||||||||||||||| || |||||||||||||||||||| |||||||||| |
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| T |
27746061 |
cttcagcacagtaaagttgattttacttgggatgatgatgacccccttcgcaaaaggaccttgagacggaaatttactgatgagcaggttagcactgccc |
27746160 |
T |
|
| Q |
223 |
tagcctatggta---aacatctgatggataacataaaaaatggggtaaaatatagtattgtaattcactatgttaattgtggaaatccaagcttgcatca |
319 |
Q |
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||| |||||||| ||||||| ||||||| | ||||||||| || ||| ||||||||||||||| | | ||||||||||||||||| ||||| |||| |
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| T |
27746161 |
tagtctatggtaaacaacatctaatggataccggaaaaaatggagttaaacatagtattgtaattcgcagtattaattgtggaaatccaggcttgtatca |
27746260 |
T |
|
| Q |
320 |
c---catgatatcaggtcttggtttcttaagacaataggaaatgcagaaacaaggaaatacatggtctgggaaat |
391 |
Q |
| |
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| |||||||||||||||||||||| |||||||||||||||| |||||||| |||| ||| ||| ||||||| |
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| T |
27746261 |
ctatgatgatatcaggtcttggtttctgaagacaataggaaatgtagaaacaatgaaaaacacggtaagggaaat |
27746335 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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