View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9313-LTR4-TNT-insertion-6 (Length: 349)
Name: F9313-LTR4-TNT-insertion-6
Description: F9313-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9313-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 9 - 339
Target Start/End: Original strand, 2691792 - 2692122
Alignment:
| Q |
9 |
ctgcaacatcatattttgaaggcagtgactatgagaatgtaaactgcaacacaatttgttttatctcatgtttgataggctaaaactgttgcagaggaaa |
108 |
Q |
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| T |
2691792 |
ctgcaacatcatattttgaaggcagtgactatgagaatgtaaactgcaacacaatttgttttatctcatgtttgataggctaaaactgttgcagaggaaa |
2691891 |
T |
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| Q |
109 |
tgagaattggatttatgggattaggttttcagcctaaatggagactaggagacatacctaaagtacctaaggtaataaatatttatgtggtatttactta |
208 |
Q |
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| T |
2691892 |
tgagaattggatttatgggattaggttttcagcctaaatggagactaggagacatacctaaagtacctaaggtaataaatatttatgtggtatttactta |
2691991 |
T |
|
| Q |
209 |
ttctatcaatatttgaatgcatatatatatagttagatggactcattgtttccttaaaagtatacttgagtgaatgtttcttaaaattcttattactgga |
308 |
Q |
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| T |
2691992 |
ttctatcaatatttgaatgcatatatatatagttagatggactcattgtttccttaaaagtatacttgagtgaatgtttcttaaaattcttattactgga |
2692091 |
T |
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| Q |
309 |
atggttgctgatatttggtttcacttgatta |
339 |
Q |
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| T |
2692092 |
atggttgctgatatttggtttcacttgatta |
2692122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 2678159 - 2678258
Alignment:
| Q |
67 |
ttttatctcatgtttgataggctaaaactgttgcagaggaaatgagaattggatttatgggattaggttttcagcctaaatggagactaggagacatacc |
166 |
Q |
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| T |
2678159 |
ttttatttcatgtttgataggccaaaactgttgcagaggaaatgggaattggatttttaggattaggttttctgcctaaatggagacaggaagacatacc |
2678258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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