View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9314-LTR4-TNT-insertion-10 (Length: 527)
Name: F9314-LTR4-TNT-insertion-10
Description: F9314-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9314-LTR4-TNT-insertion-10 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 443
Target Start/End: Complemental strand, 14674351 - 14673916
Alignment:
| Q |
8 |
gaaggttatatctatattggaagttcaaagaacatttctagctatgcatccggccattgcaatgttgttttggagagtgcaccaaatggactaaaaccat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14674351 |
gaaggttatatctatattggaagttcaaagaacatttctagctatgcatccggccattgcaatgttgttttggagagtgcaccaaatggactaaaaccat |
14674252 |
T |
|
| Q |
108 |
caaatcttcatggtggtctcaccggtgctcatccaaaatccgtgaaacgaatagtgtctaagggtgtttccttaattcggtacactgttgaccctcttgc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
14674251 |
caaatcttcatggtggtctcaccggtgctcatccaaaatccgtgaaacgaatagtgtctaagggtgtttccttaattcggtacaccgttgaccctcttgc |
14674152 |
T |
|
| Q |
208 |
atttgagcccaaatgtaatcattnnnnnnnntaatagtaatttaaatttctatcattttcttttagggttttggctttattttaactttgtgttaaaata |
307 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14674151 |
atttgagcccaaatgtaatcattaaaaaaaataatagtaatttaaatttctatcattttcttttagggttttggctttattttaactttgtgttaaaata |
14674052 |
T |
|
| Q |
308 |
tggtgtttgtatcttgaattatcaataatnnnnnnntgatttattgcacttatgtactcaaattaccattggttatcaagtttcatataatactaattca |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14674051 |
tggtgtttgtatcttgaattatcaataataagaaaatgatttattgcacttatgtactcaaattaccattggttatcaagtttcatataatactaattca |
14673952 |
T |
|
| Q |
408 |
atcaaatcaatcacataaaaatatggaaacatatta |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
14673951 |
atcaaatcaatcacataaaaatatggaaacatatta |
14673916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 60 - 336
Target Start/End: Complemental strand, 41522359 - 41522082
Alignment:
| Q |
60 |
gccattgcaatgttgttttggagagtgcaccaaatggactaaaaccatcaaatcttcatggtggtctcaccggtgctcatccaaaatccgtgaaacgaat |
159 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||||| | || || |||| || || | ||||||| | |
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|
| T |
41522359 |
gccattgcaacgttgttttggatagtgcatcaaatggactaaaaccctcaaatcttcatggtggttttactggagctcttcttaagcctgtgaaacaatc |
41522260 |
T |
|
| Q |
160 |
agtgtctaagggtgtttccttaattcggtacactgttgaccctcttgcatttgagcccaaatgtaatcattnnnnnnnntaatagtaatttaaatttcta |
259 |
Q |
| |
|
||||||||| ||||||| |||| | || | ||||| || ||| |||||||||||||||| || ||| |||| || ||||||||| || |
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|
| T |
41522259 |
ggtgtctaagagtgtttcgttaaaactctatattgttggaccgtttgtatttgagcccaaatgtcataattaagaaaaataattgtgatttaaattggta |
41522160 |
T |
|
| Q |
260 |
tcattttcttttagggttttggcttta-ttttaactttgtgttaaaatatggtgtttgtatcttgaattatcaataat |
336 |
Q |
| |
|
| | ||||||||||||||| ||| ||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
41522159 |
tgagtttcttttagggtttaggccttagttttaactttgtgttagaatatggtgtttgaatcttgaattatcaataat |
41522082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 62 - 336
Target Start/End: Complemental strand, 3175030 - 3174754
Alignment:
| Q |
62 |
cattgcaatgttgttttggagagtgcaccaaatggactaaaaccatcaaatcttcatggtggtctcaccggtgc---tcatccaaaatccgtgaaacgaa |
158 |
Q |
| |
|
|||||||| |||||||| || | ||||||||| | ||||||||| |||||||||||||||||||| | || || || || || | ||||||||| |
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|
| T |
3175030 |
cattgcaacgttgttttagatactgcaccaaaagtactaaaaccctcaaatcttcatggtggtcttagtggggcgcctcttcttaagccggtgaaacgac |
3174931 |
T |
|
| Q |
159 |
tagtgtctaagggtgtttccttaattcggtacactgttgaccctcttgcatttgagcccaaatgtaatcattnnnnnnnntaatagtaatttaaatttct |
258 |
Q |
| |
|
||||||||||||||| || |||| | |||||||||| || |||||||||||||||||||| |||||| || ||| ||||||||| | |
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|
| T |
3174930 |
cagtgtctaagggtgtctctttaaaactctacactgttggaccgtttgcatttgagcccaaatgtcatcattaaggaaaatatcagtgatttaaattgat |
3174831 |
T |
|
| Q |
259 |
atcattttcttttagggttttggc-tttattttaactttgtgttaaaatatggtgtttgtatcttgaattatcaataat |
336 |
Q |
| |
|
|| | ||||||||||||||| ||| ||| |||||||| |||||||||||||||||||| || |||||||||||||||| |
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|
| T |
3174830 |
ataagtttcttttagggtttaggcctttgttttaact--gtgttaaaatatggtgtttggattttgaattatcaataat |
3174754 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 20965222 - 20965295
Alignment:
| Q |
264 |
tttcttttagggttttggcttta-ttttaactttgtgttaaaatatggtgtttgtatcttgaattatcaataat |
336 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
20965222 |
tttcttttagggtttaggcttttgttttaactttgtgttaaaatattgtgtttggatcttgaattatcaataat |
20965295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 474 - 524
Target Start/End: Original strand, 43200395 - 43200445
Alignment:
| Q |
474 |
taatgaaaaatacacaatcaatgtaaacttttgatgggatatctagcaggt |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
43200395 |
taatgaaaaatacacaatcaatgtaaacttttgatggtatatctagcaggt |
43200445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 230
Target Start/End: Original strand, 20965005 - 20965175
Alignment:
| Q |
60 |
gccattgcaatgttgttttggagagtgcaccaaatggactaaaaccatcaaatcttcatggtggtctcaccggtgctcatccaaaatccgtgaaacgaat |
159 |
Q |
| |
|
|||||||||| |||||||| || | | ||||||| | ||||||||| |||||||||||||| ||||| || || |||| || || | ||||||||| |
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|
| T |
20965005 |
gccattgcaacgttgttttagataattcaccaaaagcactaaaaccttcaaatcttcatggcggtcttactggggctcttcttaagccagtgaaacgatc |
20965104 |
T |
|
| Q |
160 |
agtgtctaagggtgtttccttaattcggtacactgttgaccctcttgcatttgagcccaaatgtaatcatt |
230 |
Q |
| |
|
|||||||||||| |||| |||| | | |||||||| || |||||||||||||||||||| |||||| |
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|
| T |
20965105 |
agtgtctaaggggatttctttaaaactcttcactgttggaccatttgcatttgagcccaaatgtcatcatt |
20965175 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 16603188 - 16603256
Alignment:
| Q |
68 |
aatgttgttttggagagtgcaccaaatggactaaaaccatcaaatcttcatggtggtctcaccggtgct |
136 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |||| || |||||||||||||||||| |||| |||||| |
|
|
| T |
16603188 |
aatgttgtattggatagtgcaccaaatggattaaagccctcaaatcttcatggtggtgtcactggtgct |
16603256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 35334683 - 35334559
Alignment:
| Q |
11 |
ggttatatctatattggaagttcaaagaacatttctagctatgcatccggccattgcaatgttgttttggagagtgcaccaaatggactaaaaccatcaa |
110 |
Q |
| |
|
|||||| |||||||| | | ||||| ||||| || ||||||||| | || | || |||||||| |||| |||||||||||||||||||| || |||| |
|
|
| T |
35334683 |
ggttatttctatattaaaggctcaaataacatctcaagctatgcagctcgcaagtgtaatgttgtattggtcagtgcaccaaatggactaaagccctcaa |
35334584 |
T |
|
| Q |
111 |
atcttcatggtggtctcaccggtgc |
135 |
Q |
| |
|
|||||||||| ||| |||| ||||| |
|
|
| T |
35334583 |
atcttcatggcggtatcacgggtgc |
35334559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 16592635 - 16592704
Alignment:
| Q |
68 |
aatgttgttttggagagtgcaccaaatggactaaaaccatcaaatcttcatggtggtctcaccggtgctc |
137 |
Q |
| |
|
|||||||| |||| ||||||||||||||| |||| || |||||| || |||||||| |||||||||||| |
|
|
| T |
16592635 |
aatgttgtattggttagtgcaccaaatggattaaagccctcaaatattaatggtggtatcaccggtgctc |
16592704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 35325498 - 35325445
Alignment:
| Q |
83 |
agtgcaccaaatggactaaaaccatcaaatcttcatggtggtctcaccggtgct |
136 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| |||||||| || |||||| |
|
|
| T |
35325498 |
agtgcaccaaatggactaaaaccgtcgaaccttcacggtggtcttactggtgct |
35325445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 24540021 - 24539957
Alignment:
| Q |
60 |
gccattgcaatgttgttttggagagtgcaccaaatggactaaaaccatcaaatcttcatggtggt |
124 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| || | ||||||||| |||||||||||||||||| |
|
|
| T |
24540021 |
gccattgcaacgttgttttggatagtgcacctaaagtactaaaaccttcaaatcttcatggtggt |
24539957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 24539809 - 24539760
Alignment:
| Q |
287 |
ttttaactttgtgttaaaatatggtgtttgtatcttgaattatcaataat |
336 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||| ||||||||| |
|
|
| T |
24539809 |
ttttaactttgtgttcaaatatggtgtttggatcttgaatcatcaataat |
24539760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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