View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9314-LTR4-TNT-insertion-11 (Length: 768)
Name: F9314-LTR4-TNT-insertion-11
Description: F9314-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9314-LTR4-TNT-insertion-11 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 710; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 8 - 768
Target Start/End: Original strand, 20583801 - 20584561
Alignment:
| Q |
8 |
atgaaaacattgtgtacgtaacattgaatataccaaaattcacgaccatcagccatgaaaacaaatgtaaaaagggaaatgctaaccgatgctaaagggt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20583801 |
atgaaaacattgtgtacgtaacattgaatataccaaaattcacgaccatcagccatgaaaacaaatgtaaaaagggaaatgctaaccgatgctaaagggt |
20583900 |
T |
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| Q |
108 |
tattatgctaaagggttggaaacaacgtgtgactggttgttgatatagctgatcccggattaaatctcacattgaaagaaaagctacgattttgcccgca |
207 |
Q |
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| T |
20583901 |
tattatgctaaagggttggaaacaacgtgtgactggttgttgatatagctgatcccggattaaatctcacattgaaagaaaagctacgattttgcccgca |
20584000 |
T |
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| Q |
208 |
agaatagctataatctcaactgataaaaatgccggaattgctagaccagacgcggtgaccaaggtccgtaccctgactcctctatttatgtgagagtttt |
307 |
Q |
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| T |
20584001 |
agaatagctataatctcaactgataaaaatgccggaattgctagaccagacgcggtgaccaaggtccgtaccctgactcctctatttatgtgagagtttt |
20584100 |
T |
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| Q |
308 |
caatacctattgtaatttcgtctatccacnnnnnnnnnnnnnnnnnctacgattgaagttgaacaacctaatttcattcatatgcagaaactgtaataaa |
407 |
Q |
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| T |
20584101 |
caatacctattgtaatttcgtctatccacaaaaattaaaataaaaactacgattgaagttgaacaacctaatttcattcatatgcagaaactgtaataaa |
20584200 |
T |
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| Q |
408 |
ggcttttccatcttgcacagaggcattaccacccttcacagctcattgattccaaagcaatcagatagtcatagcaatgacatgatggaaaaccagtttg |
507 |
Q |
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| T |
20584201 |
ggcttttccatcttgcacagaggcattaccacccttcacagctcattgattccaaagcaatcagatagtcatagcaatgacatgatggaaaaccagtttg |
20584300 |
T |
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| Q |
508 |
cagtcattgattcaaaaatgcaaatggtatgctatcagttataacattagtcaaatgcaaactaaacgtccgaaagcaattgtaaaaggaaaacaaaatg |
607 |
Q |
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| T |
20584301 |
cagtcattgattcaaaaatgcaaatggtatgctatcagttataacattagtcaaatgcaaactaaacgtccgaaagcaattgtaaaaggaaaacaaaatg |
20584400 |
T |
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| Q |
608 |
caaactaaacgtccaatccaccctaccattatccacggtgtagaagaccaacttgttacttataagcagaacaacatgattttcaagaatgagcactggt |
707 |
Q |
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| T |
20584401 |
caaactaaacgtccaatccaccctaccattatccacggtgtagaagaccaacttgttacttataagcagaacaacatgattttcaagaatgagcactggt |
20584500 |
T |
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| Q |
708 |
ttaatacaagaaagtgtgtgttgtgcatgattctgtaactgctctagagtttcttacacgc |
768 |
Q |
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| T |
20584501 |
ttaatacaagaaagtgtgtgttgtgcatgattctgtaactgctctagagtttcttacacgc |
20584561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 575
Target Start/End: Original strand, 20574950 - 20575057
Alignment:
| Q |
469 |
cagatagtcatagcaatgacatgatggaaaaccagtttgcagtcattgattcaaaa-atgcaaatggtatgctatcagttataacattagtcaaatgcaa |
567 |
Q |
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||||||||| | ||||||||||||| ||||| ||||||||| ||| ||| |||| |||||||||||| || |||| | ||| |||||| ||||| || |
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| T |
20574950 |
cagatagtctttgcaatgacatgataaaaaactagtttgcagccataaattgaaaaaatgcaaatggtacgcaatcaataatagcattagcgaaatgaaa |
20575049 |
T |
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| Q |
568 |
actaaacg |
575 |
Q |
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|||||||| |
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| T |
20575050 |
actaaacg |
20575057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 531
Target Start/End: Original strand, 20577816 - 20577851
Alignment:
| Q |
496 |
aaaaccagtttgcagtcattgattcaaaaatgcaaa |
531 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
20577816 |
aaaactagtttgcagtcattgattcaaaaatgcaaa |
20577851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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