View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9314-LTR4-TNT-insertion-2 (Length: 301)
Name: F9314-LTR4-TNT-insertion-2
Description: F9314-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9314-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 30774097 - 30773813
Alignment:
| Q |
8 |
tggacaaaatttgctgtgaccatgttatctaagattgtgactgttcctgacttgtaaaccaacattattatgccaaccttgtgctaaaagattgtaacca |
107 |
Q |
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| T |
30774097 |
tggacaaaatttgctgtgaccatgttatctaagattgtgactgttcctgacttgtaaaccaacattattatgccaaccttgtgctaaaagattgtaacca |
30773998 |
T |
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| Q |
108 |
tgacttgggcgctcatgttaccatttcagttaattttgattttatttgattggtatacaagtttctttgattagagaaaagtaatgttaatttcgtctct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30773997 |
tgacttgggcgctcatgttaccatttcagttaattttgattttatttgattggtatacaagtttctttgattagagaaaagtaatgttaatttcgtctct |
30773898 |
T |
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| Q |
208 |
aaaatatagttcaaaactaattatcaagttgtagttttggttgtcttggtgagaagggtttgagtgatcactgtctcaacaattg |
292 |
Q |
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| T |
30773897 |
aaaatatagttcaaaactaattatcaagttgtagttttggttgtcttggtgagaagggtttgagtgatcactgtctcaacaattg |
30773813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 16663341 - 16663467
Alignment:
| Q |
55 |
tgacttgtaaaccaacattattatgccaaccttgtgctaaaagattgtaaccatgacttgggcgctcatgttaccatttcagttaattttgattttattt |
154 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||| |
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| T |
16663341 |
tgacttgtaaaccaacattaccatgccaatcttgtgctaaaagactgtaaccatgatttgggcactcttgttaccttttcagttaattttgattttattt |
16663440 |
T |
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| Q |
155 |
gattggtatacaagtttctttgattag |
181 |
Q |
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| T |
16663441 |
gattggcttaaaagtttatgtgattag |
16663467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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