View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9314-LTR4-TNT-insertion-3 (Length: 621)
Name: F9314-LTR4-TNT-insertion-3
Description: F9314-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9314-LTR4-TNT-insertion-3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 11 - 611
Target Start/End: Original strand, 1287855 - 1288455
Alignment:
| Q |
11 |
acatcagtagaagagcaagcattacaggcaaaacttgtagcgtagtactcgatcgtgctcaatccattttagagaatgaactcagttaagcaaacaaatc |
110 |
Q |
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| T |
1287855 |
acatcagtagaagagcaagcattacaggcaaaacttgtagcgtagtactcgatcgtgctcagtccattttagagaatgaactcagttaagcaaacaaatc |
1287954 |
T |
|
| Q |
111 |
tctaaactcagttaagcaaattgtatgcctcttgcctgtaacaaaaaatcttcccacacttgatacatcataatactacttaatttatatatcgtttgga |
210 |
Q |
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| T |
1287955 |
tctaaactcagttaagcaaattgtatgcctcttgcctgtaacaaaaaatcttcccacacttgatacatcataatactacttaatttatatatcgtttgga |
1288054 |
T |
|
| Q |
211 |
attcattccaactaatcaatgattctgggagccagttgatgatgcaaccctattaacatcgttatggagggttatccttatacgtggtggaggagaaaat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1288055 |
attcattccaactaatcaatgattctgggagccagttgatgatgcaaccctattaacatcgttatggagggttatccttatacgtggtggaggagaaaat |
1288154 |
T |
|
| Q |
311 |
gggcagatagagaagttgagcagagattggatagaacgacggttggaacaccaagtgtgtttgtgtgaattgaaaaattattatgtcccatatccggtag |
410 |
Q |
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| T |
1288155 |
gggcagatagagaagttgagcagagattggatagaacgacggttggaacaccaagtgtgtttgtgtgaattgaaaaattattatgtcccatatccggtag |
1288254 |
T |
|
| Q |
411 |
attatacacacaatattagtgggcaagacttacatacggttccatacacacagttcaacctgtgcttcatgtaattttgattaaacggcatcgtttaaaa |
510 |
Q |
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| T |
1288255 |
attatacacacaatattagtgggcaagacttacatacggttccatacacacagttcaacctgtgcttcatgtaattttgattaaacggcatcgtttaaaa |
1288354 |
T |
|
| Q |
511 |
caattaaggaggtgttggttggcacgtgatttagccaaatttagtacggaacagcatacacagtgcgtaggtcattgtacataagtaatttcctttaatt |
610 |
Q |
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| T |
1288355 |
caattaaggaggtgttggttggcacgtgatttagccaaatttagtacggaacagcatacacagtgcgtaggtcattgtacataagtaatttcctttaatt |
1288454 |
T |
|
| Q |
611 |
a |
611 |
Q |
| |
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| T |
1288455 |
a |
1288455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 6e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 430 - 604
Target Start/End: Original strand, 1456192 - 1456366
Alignment:
| Q |
430 |
tgggcaagacttacatacggttccatacacacagttcaacctgtgcttcatgtaattttgattaaacggcatcgtttaaaacaattaaggaggtgttggt |
529 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1456192 |
tgggcaagacttacatacggttccatacacacaattcaacctgtgtttcatgtaattttgattaaacggcatcgtttaaaacaactaaggaggtgttggt |
1456291 |
T |
|
| Q |
530 |
tggcacgtgatttagccaaatttagtacggaacagcatacacagtgcgtaggtcattgtacataagtaatttcct |
604 |
Q |
| |
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| T |
1456292 |
tggcacgtgatttagccaaatttagtacgaaacagcatacacagtgcgtaggtcactgtacataagtaatttcct |
1456366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 453 - 606
Target Start/End: Complemental strand, 12891548 - 12891395
Alignment:
| Q |
453 |
catacacacagttcaacctgtgcttcatgtaattttgattaaacggcatcgtttaaaacaattaaggaggtgttggttggcacgtgatttagccaaattt |
552 |
Q |
| |
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|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
12891548 |
catatacacagttcaatctatgcttcatgtaattttgattaaacggcatcgtttaaaacaattaaaaaggtgttggttggcacgtaatttagccaaattt |
12891449 |
T |
|
| Q |
553 |
agtacggaacagcatacacagtgcgtaggtcattgtacataagtaatttccttt |
606 |
Q |
| |
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|||| ||||||||||||||||| |||||||| |||| |||||||||||||||| |
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| T |
12891448 |
agtattgaacagcatacacagtgtgtaggtcactgtaaataagtaatttccttt |
12891395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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