View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9314-LTR4-TNT-insertion-5 (Length: 507)
Name: F9314-LTR4-TNT-insertion-5
Description: F9314-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9314-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 10 - 498
Target Start/End: Complemental strand, 42838281 - 42837793
Alignment:
| Q |
10 |
aggagcacacatcattgttggaggcaaatcaggtgtagggtcttcctcatagtgaacatatttacatgtgttcatgtgccggcaagtacgaagaagagga |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42838281 |
aggagcacacatcattgttggaggcaaatcaggtgtagggtcttcctcatagtgaacatatttacatgtgttcatgtgccggcaagtacgaagaaaagga |
42838182 |
T |
|
| Q |
110 |
cagtctcccaaattaatgtcagtatgaagagcaatgattcgtctaaaatgaagcttattacatgctataaaggaaccagtccggcgtcgacagtcttctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838181 |
cagtctcccaaattaatgtcagtatgaagagcaatgattcgtctaaaatgaagcttattacatgctataaaggaaccagtccggcgtcgacagtcttctt |
42838082 |
T |
|
| Q |
210 |
ttgttggtaagtcacaatatggtctcatctgagaaccacctttagttttgaacttggcagctacagcagcctcccttatgcttggagtctgaataatttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838081 |
ttgttggtaagtcacaatatggtctcatctgagaaccacctttagttttgaacttggcagctacagcagcctcccttatgcttggagtctgaataatttt |
42837982 |
T |
|
| Q |
310 |
taaaagctccttagcagtttcatatttttgcatctccccaaatgatttcttattaattaaagcatcaacatcctccaaattcatactacactttgcaatt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42837981 |
taaaagctccttagcagtttcatatttttgcatctccctaaatgatttcttattaattaaagcatcaacatcctccaaattcatactacactttgcaatt |
42837882 |
T |
|
| Q |
410 |
tgttgctggttttgattcatattaccatctccgagactcagttcatcttgctgttgctgcagctgatgttgtgcagtttcaggcaattg |
498 |
Q |
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| T |
42837881 |
tgttgctgattttgattcatattaccatctccgagactcagttcatcttgctgttgctgcagctgatgttgtgcagtttcaggcaattg |
42837793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 43913748 - 43913848
Alignment:
| Q |
163 |
cttattacatgctataaaggaaccagtccggcgtcgacagtcttcttttgttggtaagtcacaatatggtctcatctgagaaccacctttagttttgaac |
262 |
Q |
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|||||||||||||| ||||||||| ||| |||| ||||| ||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||| |
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| T |
43913748 |
cttattacatgctacaaaggaaccggtctggcgccgacaatcttcttttgtcagtaagtcacaatattgtttcacctgagaaccacctttagttttgaac |
43913847 |
T |
|
| Q |
263 |
t |
263 |
Q |
| |
|
| |
|
|
| T |
43913848 |
t |
43913848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 43913471 - 43913552
Alignment:
| Q |
80 |
ttcatgtgccggcaagtacgaagaagaggacagtctcccaaattaatgtcagtatgaagagcaatgattcgtctaaaatgaa |
161 |
Q |
| |
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|||||||||||||||||| |||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
43913471 |
ttcatgtgccggcaagtatctagaaaagaacagtctcccagattaatgtcagtgtgaagagcaatgattcgtctaaaatgaa |
43913552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 43913303 - 43913369
Alignment:
| Q |
12 |
gagcacacatcattgttggaggcaaatcaggtgtagggtcttcctcatagtgaacatatttacatgt |
78 |
Q |
| |
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|||||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
43913303 |
gagcacccgtcattgttggaggcaaatcaggtgtagggtcatactcatagtgaacatatttacatgt |
43913369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 448
Target Start/End: Original strand, 43914408 - 43914451
Alignment:
| Q |
405 |
caatttgttgctggttttgattcatattaccatctccgagactc |
448 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
43914408 |
caatttgttgctgattttgattcatattaccatctccaagactc |
43914451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 377
Target Start/End: Original strand, 43914035 - 43914101
Alignment:
| Q |
311 |
aaaagctccttagcagtttcatatttttgcatctccccaaatgatttcttattaattaaagcatcaa |
377 |
Q |
| |
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|||||||||||| |||||| ||||||||||||||| ||| |||||||||||||||| ||| |||| |
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| T |
43914035 |
aaaagctccttaccagttttggatttttgcatctccctaaacgatttcttattaattatagcctcaa |
43914101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 8635071 - 8635122
Alignment:
| Q |
110 |
cagtctcccaaattaatgtcagtatgaagagcaatgattcgtctaaaatgaa |
161 |
Q |
| |
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|||||||| ||| ||| | |||||||||||| |||||||||||||||||||| |
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| T |
8635071 |
cagtctcctaaactaaagccagtatgaagagaaatgattcgtctaaaatgaa |
8635122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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