View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9315-LTR4-TNT-insertion-11 (Length: 212)
Name: F9315-LTR4-TNT-insertion-11
Description: F9315-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9315-LTR4-TNT-insertion-11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 52495687 - 52495495
Alignment:
| Q |
10 |
atcaacgctggctgtagtagaattgaattgtggggattcagtgctagtaacaaaatcaagcctaattccctttcttgccatgtaaatatgagaaagtgca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52495687 |
atcaacgctggctgtagtagaattgaattgtggggattcagtgctagtaacaaaatcaagcctaattccctttcttgccatgtaaatatgagaaagtgca |
52495588 |
T |
|
| Q |
110 |
gaactgtgatgaattgcagtttcaactcatcttcaaatggtagtggaagtatggctgaaaattttaatgaaaatgatgaagattatgttaatt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52495587 |
gaactgtgatgaattgcagtttcaactcatcttcaaatggtagtggaagtatggctgaaaattttaatgaaaatgatgaagattatgttaatt |
52495495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 7217562 - 7217515
Alignment:
| Q |
152 |
gtggaagtatggctgaaaattttaatgaaaatgatgaagattatgtta |
199 |
Q |
| |
|
||||||||||||| |||| ||| |||||||| |||||||||||||||| |
|
|
| T |
7217562 |
gtggaagtatggcagaaagtttcaatgaaaaagatgaagattatgtta |
7217515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 351 times since January 2019
Visitors: 967