View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9315-LTR4-TNT-insertion-2 (Length: 221)
Name: F9315-LTR4-TNT-insertion-2
Description: F9315-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9315-LTR4-TNT-insertion-2 |
 | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
| [»] scaffold1064 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 296814 - 297018
Alignment:
| Q |
7 |
agtaaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
296814 |
agtaaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatg |
296913 |
T |
|
| Q |
107 |
gttttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatgattaagggggagtattagaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
296914 |
gttttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatgattaagggggagtattagaa |
297013 |
T |
|
| Q |
207 |
tatta |
211 |
Q |
| |
|
||||| |
|
|
| T |
297014 |
tatta |
297018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 30380393 - 30380595
Alignment:
| Q |
7 |
agtaaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||| | |||||||| ||||||| ||| |
|
|
| T |
30380393 |
agtaaacacattgagaccagattccatttcattagagagcaggtgactaatggaatgattgagctacactactatacaacagaactgcaacttgcatatg |
30380492 |
T |
|
| Q |
107 |
gttttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatgattaagggggagtattagaa |
206 |
Q |
| |
|
| ||||||||||||| ||||||||||| |||| |||| |||||||| ||| | |||| ||||| || |||| |||||||||||||||| |||||||||| |
|
|
| T |
30380493 |
g-tttacaaaagcagtgaagcttgacatattttaatttttgaggaaaaaacttggtg-tttttgatgttcaacagttatgattaagggaaagtattagaa |
30380590 |
T |
|
| Q |
207 |
tatta |
211 |
Q |
| |
|
||||| |
|
|
| T |
30380591 |
tatta |
30380595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 35898350 - 35898511
Alignment:
| Q |
7 |
agtaaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||| |||| ||||| ||||||| | ||| |
|
|
| T |
35898350 |
agtaaacacattgagaccagattccatttcattagagagcaggtgactaatggaatgattgagctgcactattgctccacggaactgcaacttgcttatg |
35898449 |
T |
|
| Q |
107 |
gttttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttt |
168 |
Q |
| |
|
| |||| ||| |||| |||| |||||| ||||||||||||||||||| || | ||||||||| |
|
|
| T |
35898450 |
gctttaaaaaggcagtgaagtttgacagatttgaattcttgaggaaggaacttggtgttttt |
35898511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 37787016 - 37786813
Alignment:
| Q |
7 |
agtaaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatg |
106 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37787016 |
agtaaacacattgagaccatattccatttcattagagagcaagtgactaatggaatgattgagctgcactactgccccacagaactacaacttgctgatg |
37786917 |
T |
|
| Q |
107 |
gttttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatgattaagggggagtattagaa |
206 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37786916 |
gttttacaaaagcagtgaagcttgacagatttgaattcttgaggaataaattaggtgt-ttttaatattcagcagttatgattaagggggagtattggaa |
37786818 |
T |
|
| Q |
207 |
tatta |
211 |
Q |
| |
|
||||| |
|
|
| T |
37786817 |
tatta |
37786813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 6414346 - 6414544
Alignment:
| Q |
10 |
aaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatggtt |
109 |
Q |
| |
|
|||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||| |||||||| ||||| || |||||| | || |||| ||||||| |
|
|
| T |
6414346 |
aaacacattgggactagattctatttcattagggagcaggtgactaatggagtgattgagttgcattactgtcctacagaattgcagcttgcagatggtt |
6414445 |
T |
|
| Q |
110 |
ttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagtta-tgattaa-gggggagtattagaat |
207 |
Q |
| |
|
||||||| || ||||||||| | |||| || | |||||||||||| | | || || |||| |||||||||||| | ||||| |||||||||||||||| |
|
|
| T |
6414446 |
ttacaaaggctttgaagcttgatagatttaaacttttgaggaagaaacttgttg-ttgttaacattcagcagttattaattaaggggggagtattagaat |
6414544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 49063 - 49266
Alignment:
| Q |
7 |
agtaaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatg |
106 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49063 |
agtaaacacatttcgaccagattccatttcattagagagcatgtgactaatggaatgattgagttgcactactgccccacagaactacaacttgctgatg |
49162 |
T |
|
| Q |
107 |
gttttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatgattaagggggagtattagaa |
206 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
49163 |
gttttacaaaagcagtgaagcttgacaaatttgaattcttgaggaagaaattaggtg-ttcttaatattcagtagttatgattaagggggagtattggag |
49261 |
T |
|
| Q |
207 |
tatta |
211 |
Q |
| |
|
||||| |
|
|
| T |
49262 |
tatta |
49266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 28248901 - 28249104
Alignment:
| Q |
7 |
agtaaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatg |
106 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28248901 |
agtaaacacatttcgaccagattccatttcattagagagcatgtgactaatggaatgattgagttgcactactgccccacagaactacaacttgctgatg |
28249000 |
T |
|
| Q |
107 |
gttttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatgattaagggggagtattagaa |
206 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
28249001 |
gttttacaaaagcagtgaagcttgacaaatttgaattcttgaggaagaaattaggtg-ttcttaatattcagtagttatgattaagggggagtattggag |
28249099 |
T |
|
| Q |
207 |
tatta |
211 |
Q |
| |
|
||||| |
|
|
| T |
28249100 |
tatta |
28249104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 207
Target Start/End: Complemental strand, 11187082 - 11186979
Alignment:
| Q |
103 |
gatggttttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatgattaagggggagtatt |
202 |
Q |
| |
|
||||||||||||||||||| ||| ||| || ||||||||| |||||||||||| ||||| ||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
11187082 |
gatggttttacaaaagcagtgaaacttcacgtatttgaatttttgaggaagaaactaggtatttttga-tgttcagcagttatgattaagggggagtatt |
11186984 |
T |
|
| Q |
203 |
agaat |
207 |
Q |
| |
|
||||| |
|
|
| T |
11186983 |
agaat |
11186979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 302079 - 302280
Alignment:
| Q |
7 |
agtaaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatg |
106 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
302079 |
agtaaacacattgagaccagattcaatttcatttgagagcaggtgactaatggaatgattgagctgcactactgccccacaaaactacaacttgctgatg |
302178 |
T |
|
| Q |
107 |
gttttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatgattaagggggagtattagaa |
206 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
302179 |
gttttacaaaagcaatgaagcttgacagatttgaattcttgaggaagaaattaggtg-tttttaatattcaacagttatgattaagggggagtattggaa |
302277 |
T |
|
| Q |
207 |
tat |
209 |
Q |
| |
|
||| |
|
|
| T |
302278 |
tat |
302280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 50 - 211
Target Start/End: Complemental strand, 39190997 - 39190837
Alignment:
| Q |
50 |
tgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatggttttacaaaagcagcgaagcttgacacatttgaattcttgag |
149 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
39190997 |
tgactaatggaatgattgagctgcactactgccccacagaactgcaacttgctgatggttttgcaaaagcagtgaagcttgacagatttgaattcttgag |
39190898 |
T |
|
| Q |
150 |
gaagaaattaggtgttttttaatattcagcagttatgattaagggggagtattagaatatta |
211 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39190897 |
gaagaaattaggtgt-ttttaatatgcagcagttatgattaagggggagtattagaatatta |
39190837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 3461526 - 3461722
Alignment:
| Q |
7 |
agtaaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatg |
106 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||| ||| ||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
3461526 |
agtaaacacattgagaccatattccattttattagagagcatgtgactaatggaatgattgagctgcactattgccccacagaactgcaacttgctgatg |
3461625 |
T |
|
| Q |
107 |
gttttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatgattaagggggagtattag |
204 |
Q |
| |
|
|||||||||| |||| |||||||||| ||||||||||||||| ||| || | |||| ||||| ||||| |||||||||||||| |||| ||||||| |
|
|
| T |
3461626 |
gttttacaaaggcagtaaagcttgacatatttgaattcttgagaaaggaacttggtg-tttttgatattaggcagttatgattaaaggggggtattag |
3461722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 38099549 - 38099348
Alignment:
| Q |
10 |
aaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatggtt |
109 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| || | || || || || |||||| | | || | |||| | |
|
|
| T |
38099549 |
aaacacattgagactagattccatttcattagggagcgagtgactaatggtatgattgaactacaatattgtcctacagaattgtagctagcatatggct |
38099450 |
T |
|
| Q |
110 |
ttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatg-attaagggggagtattagaata |
208 |
Q |
| |
|
||||||| || |||||||| || ||||||||| |||||||||||| | |||| || |||| |||||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
38099449 |
ttacaaaggctttgaagcttggcatatttgaatttttgaggaagaaacttggtg-ttgttaacattcagcaattatgaattaagggggagtgttagaata |
38099351 |
T |
|
| Q |
209 |
tta |
211 |
Q |
| |
|
||| |
|
|
| T |
38099350 |
tta |
38099348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 5706910 - 5707112
Alignment:
| Q |
7 |
agtaaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatg |
106 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
5706910 |
agtaaacacttagagaccagattccatttcattagggagcaagtgactaatggaatgattgagctgcactactgccccacagaactacaacttgccgatg |
5707009 |
T |
|
| Q |
107 |
gttttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatgattaagggggagtattagaa |
206 |
Q |
| |
|
| |||||||| |||| ||||||||||| ||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
5707010 |
gctttacaaatgcagtgaagcttgacaaatttgaatttgtgaggaagaaattaagtg-tatttaatattcagcagttatgattaa-ggggagtattggaa |
5707107 |
T |
|
| Q |
207 |
tatta |
211 |
Q |
| |
|
||||| |
|
|
| T |
5707108 |
tatta |
5707112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 50935442 - 50935550
Alignment:
| Q |
102 |
tgatggttttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatgattaagggggagtat |
201 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| |||||| ||| |||| |||||| ||||||| ||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
50935442 |
tgatagttttacaaaagcagtgaagcttgacatatttgagttcctgagaaagaaagtaggtgtcttt-aatattcaacagttatgattaagggggagtat |
50935540 |
T |
|
| Q |
202 |
tagaatatta |
211 |
Q |
| |
|
|||||||||| |
|
|
| T |
50935541 |
tagaatatta |
50935550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 9238493 - 9238294
Alignment:
| Q |
10 |
aaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatggtt |
109 |
Q |
| |
|
||||| |||||||| ||||| | ||||||| || |||||||||||||||| ||||| |||||||| || || || ||| || | || |||| ||||| | |
|
|
| T |
9238493 |
aaacatattgagactagatttcgtttcatttggaagcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggct |
9238394 |
T |
|
| Q |
110 |
ttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatg-attaagggggagtattagaata |
208 |
Q |
| |
|
||||||| | ||||||||||| ||||||||| |||||||| ||| | |||| || | || |||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
9238393 |
ttacaaagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtg-ttgtgaacattcagcagttatgaattaaggggaagtattagaata |
9238295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 26905072 - 26905273
Alignment:
| Q |
10 |
aaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatggtt |
109 |
Q |
| |
|
|||||||||||||| |||||||| |||||| |||||||| ||| ||||| |||||| ||| | || || || || | |||||| || |||| ||| | |
|
|
| T |
26905072 |
aaacacattgagactagattccacttcattggggagcagatgaataatgaaatgattgagctacattattgtcctatagaactgcagcttgcatgtggct |
26905171 |
T |
|
| Q |
110 |
ttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatg-attaagggggagtattagaata |
208 |
Q |
| |
|
||||||| || ||||||||||| |||| |||| || ||||||||| | |||| || |||||||| |||||||||| ||||| |||||||||||| ||| |
|
|
| T |
26905172 |
ttacaaaggctttgaagcttgacaaatttaaatttttaaggaagaaacttggtg-ttgttaatatttagcagttatgaattaatggggagtattagtata |
26905270 |
T |
|
| Q |
209 |
tta |
211 |
Q |
| |
|
||| |
|
|
| T |
26905271 |
tta |
26905273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 9881050 - 9881194
Alignment:
| Q |
27 |
attccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatggttttacaaaagcag-cgaa |
125 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||| ||| |||| || || ||||| || | ||||||| ||||||||||| || |||| || |
|
|
| T |
9881050 |
attccattttattagggagcagatgactaatggaatgaatgaggtgcaatattgtcccactgagttgcaacttgcagatggttttactaaggcagtaaaa |
9881149 |
T |
|
| Q |
126 |
gcttgac-acatttgaattcttgaggaagaaattaggtgtttttt |
169 |
Q |
| |
|
|||||| | ||||||||| |||||||||||| | |||||||||| |
|
|
| T |
9881150 |
acttgacaaaatttgaatttttgaggaagaaacttggtgtttttt |
9881194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 18641363 - 18641161
Alignment:
| Q |
7 |
agtaaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatg |
106 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
18641363 |
agtaaacacttagagaccagattccatttcattagggagcaagtgactaatggaatgattgagctgcactactgccccacagaactacaacttgccgatg |
18641264 |
T |
|
| Q |
107 |
gttttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatgattaagggggagtattagaa |
206 |
Q |
| |
|
| |||||||| |||| ||||||||||| ||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
18641263 |
gctttacaaatgcagtgaagcttgacaaatttgaatttgtgaggaagaaattaagtg-tatttaatattcagcagttatgattaa-ggggagtattggaa |
18641166 |
T |
|
| Q |
207 |
tatta |
211 |
Q |
| |
|
||||| |
|
|
| T |
18641165 |
tatta |
18641161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 50778519 - 50778358
Alignment:
| Q |
7 |
agtaaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| ||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
50778519 |
agtaaacacattgagaccagattccatttcattagagagcaggtgactaattgaatgattgagctgcactattgccccacagaactgcaacttgctgatg |
50778420 |
T |
|
| Q |
107 |
gttttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttt |
168 |
Q |
| |
|
| |||||||| |||| |||||||||| ||||||||| || |||||| || | ||||||||| |
|
|
| T |
50778419 |
gctttacaaaggcagtaaagcttgacagatttgaattttttaggaaggaacttggtgttttt |
50778358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 14233862 - 14234033
Alignment:
| Q |
13 |
cacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatggtttta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| || || ||||| || || ||||||| |||||||||| |
|
|
| T |
14233862 |
cacattgagaccagattccatttcattagggagcaggtgactaatggaatgattgaggtgcaatattgtcccactgagctgcaacttgcagatggtttta |
14233961 |
T |
|
| Q |
113 |
caaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagtta |
184 |
Q |
| |
|
| || |||| || ||||||| ||||||||| || ||||||||| | ||||||||| ||| ||||||||||| |
|
|
| T |
14233962 |
ctaaggcagtaaaacttgacagatttgaattttttaggaagaaacttggtgtttttcaatgttcagcagtta |
14234033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 31000575 - 31000638
Alignment:
| Q |
136 |
tttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatg-attaagggggagt |
199 |
Q |
| |
|
|||||||| |||||||||||| | | ||||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
31000575 |
tttgaatttttgaggaagaaacttgatgttttt-aacattcagcagttatgaattaagggggagt |
31000638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 2355 - 2267
Alignment:
| Q |
123 |
gaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatga-ttaagggggagtattagaatatta |
211 |
Q |
| |
|
||||||||| | |||| |||| |||||||| ||| | |||||| | || ||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2355 |
gaagcttgaaatattttaatttttgaggaaaaaacttggtgttgtg-aacattaagcagttatgaattaagggggagtattagaatatta |
2267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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