View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9315-LTR4-TNT-insertion-3 (Length: 291)
Name: F9315-LTR4-TNT-insertion-3
Description: F9315-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9315-LTR4-TNT-insertion-3 |
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| [»] scaffold0952 (1 HSPs) |
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| [»] scaffold0717 (1 HSPs) |
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| [»] scaffold1562 (1 HSPs) |
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| [»] scaffold1158 (1 HSPs) |
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Alignment Details
Target: scaffold0952 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: scaffold0952
Description:
Target: scaffold0952; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 2772 - 3045
Alignment:
| Q |
8 |
atatcaccgtgatatctctgatatagcggtagcggtatcaaagtattatggattaccgtatacaatgggaattgataattgtttaagggttcagaaatat |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2772 |
atatcaccgtgatatctctgatatagcggtagcggtatcaaagtattatagattaccgtatacaatgggaattgataattgtttaagggttcagaaatat |
2871 |
T |
|
| Q |
108 |
tatagagctatatcactataatgtcgttaactattcctctaatgaatcctcttaatcgattgtatactttcaatgtttcaattataccttccattctctt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2872 |
tatagagctatatcactataatgtcgttaactattcctctaatgaatcctcttaatcgattgtatactttcaatgtttcaattataccttccattctctt |
2971 |
T |
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| Q |
208 |
atcatatgtttttatgtctgacaaacgaggatggatccattctacctattaacttcttgtattttgctcaatta |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2972 |
atcatatgtttttatgtctgacaaacgaggatggatccattctacctattaacttcttgtattttgctcaatta |
3045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 20534942 - 20534666
Alignment:
| Q |
8 |
atatcaccgtgatatctctg-atatagcggtagcggtatcaaagtattatggattaccgtatacaatgggaattgataattgtttaagggttcagaaata |
106 |
Q |
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| T |
20534942 |
atatcaccgtgatatctctgtatatagcggtagcggtatcaaagtattatagattaccgtattcaatgggaattggtaattgtttaacggttcagaaata |
20534843 |
T |
|
| Q |
107 |
ttatagagctatatcactataatgtcgttaactattcctctaatgaatcctcttaatcgattgtatactttcaatgtttcaattatacctt--ccattct |
204 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| |
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| T |
20534842 |
ttatagagctatatcactataatgttgttaactattcctctaatgaatcctcttaatcgattgtatactttcaatgtttcaactataccttccccaatct |
20534743 |
T |
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| Q |
205 |
cttatcatatgtttttatgtctgacaaacgaggatggatccattctacctattaacttcttgtattttgctcaatta |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
20534742 |
cttatcatatgtttttatgtctgacaaacgaggatggatccattctacctattaacttcttgtatctcgctcaatta |
20534666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 40346970 - 40346908
Alignment:
| Q |
130 |
gtcgttaactattcctctaatgaatcctcttaatcgattgtatactttcaatgtttcaattata |
193 |
Q |
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||||||| |||||||||||||| ||||||||||| |||| |||| ||| ||| ||||||||||| |
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| T |
40346970 |
gtcgttagctattcctctaatgtatcctcttaattgattatata-ttttaatttttcaattata |
40346908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0717 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0717
Description:
Target: scaffold0717; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 42 - 281
Target Start/End: Complemental strand, 2556 - 2316
Alignment:
| Q |
42 |
gtatcaaagtattatggattaccgtatacaatgggaattgataattgtttaagggttcagaaatattatagagctatatcactataatgtcgttaactat |
141 |
Q |
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||||||||||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2556 |
gtatcaaagtattatagattaccgtattcaatgggaattggtaattgtttaacggttcagaaatat-atagagctatatcactataatgtcgttaactat |
2458 |
T |
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| Q |
142 |
tcctctaatgaatcctcttaatcgattgtatactttcaatgtttcaattatacctt--ccattctcttatcatatgtttttatgtctgacaaacgaggat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2457 |
tcctctaatgaatcctcttaatcgattgtatactttcaatgtttcaactataccttccccaatctcttatcatatgtttttatgtctgacaaacgaggat |
2358 |
T |
|
| Q |
240 |
ggatccattctacctattaacttcttgtattttgctcaatta |
281 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||| |
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| T |
2357 |
ggatccattctacctattaacttcttgtatctcgctcaatta |
2316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1562 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold1562
Description:
Target: scaffold1562; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 37 - 269
Target Start/End: Complemental strand, 1285 - 1051
Alignment:
| Q |
37 |
tagcggtatcaaagtattatggattaccgtatacaatgggaattgataattgtttaagggttcagaaatattatagagctatatcactataatgtcgtta |
136 |
Q |
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|||| ||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1285 |
tagcagtatcaaagtattatagattaccgtattcaatgtgaattagtaattgtttaacggttcataaatattatagagctatatcactataatgtcgtta |
1186 |
T |
|
| Q |
137 |
actattcctctaatgaatcctcttaatcgattgtatactttcaatgtttcaattatacct--tccattctcttatcatatgtttttatgtctgacaaacg |
234 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
1185 |
actattcctctaatgaatcctcttaattgattgtatactttcaatgtttcagctataccttctccaatctcttatcatatgtttttatgtctgacaaacg |
1086 |
T |
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| Q |
235 |
aggatggatccattctacctattaacttcttgtat |
269 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
1085 |
aggatggatccattctacttattaacttcttgtat |
1051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1158 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold1158
Description:
Target: scaffold1158; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 37 - 269
Target Start/End: Original strand, 1308 - 1542
Alignment:
| Q |
37 |
tagcggtatcaaagtattatggattaccgtatacaatgggaattgataattgtttaagggttcagaaatattatagagctatatcactataatgtcgtta |
136 |
Q |
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|
|||| ||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1308 |
tagcagtatcaaagtattatagattaccgtattcaatgtgaattagtaattgtttaacggttcataaatattatagagctatatcactataatgtcgtta |
1407 |
T |
|
| Q |
137 |
actattcctctaatgaatcctcttaatcgattgtatactttcaatgtttcaattatacct--tccattctcttatcatatgtttttatgtctgacaaacg |
234 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
1408 |
actattcctctaatgaatcctcttaattgattgtatactttcaatgtttcagctataccttctccaatctcttatcatatgtttttatgtctgacaaacg |
1507 |
T |
|
| Q |
235 |
aggatggatccattctacctattaacttcttgtat |
269 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
1508 |
aggatggatccattctacttattaacttcttgtat |
1542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 35917782 - 35917732
Alignment:
| Q |
145 |
tctaatgaatcctcttaatcgattgtatactttcaatgtttcaattatacc |
195 |
Q |
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||||||| ||||||| |||||||| |||||||||||| ||| ||||||||| |
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| T |
35917782 |
tctaatgtatcctctaaatcgattatatactttcaatattttaattatacc |
35917732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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