View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9315-LTR4-TNT-insertion-4 (Length: 178)
Name: F9315-LTR4-TNT-insertion-4
Description: F9315-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9315-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 4e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 52583143 - 52582983
Alignment:
| Q |
10 |
gtcattcaaaaccaacgacaagtttggagacctattagagggttacctgaaacatctgtagcaattcttcgtgcttggctctttgagcactttcttcatc |
109 |
Q |
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| T |
52583143 |
gtcattcaaaaccaacgacaagtttggagacctattagagggttacctgaaacatctgtagcaattcttcgtgcttggctctttgagcactttcttcatc |
52583044 |
T |
|
| Q |
110 |
cgtaagcttatatcaaaattctgtttttgtttttatgttatgtcattttcttgtcttatta |
170 |
Q |
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| T |
52583043 |
cgtaagcttatatcaaaattctgtttttgtttttatgttatgtcattttcttgtcttatta |
52582983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 52591105 - 52591061
Alignment:
| Q |
71 |
caattcttcgtgcttggctctttgagcactttcttcatccgtaag |
115 |
Q |
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|||| |||||||||||||||||||| || |||||| ||||||||| |
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| T |
52591105 |
caatacttcgtgcttggctctttgaacattttcttaatccgtaag |
52591061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 43242935 - 43242984
Alignment:
| Q |
46 |
agagggttacctgaaacatctgtagcaattcttcgtgcttggctctttga |
95 |
Q |
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||||| |||||||||| ||||||| | |||||||||||||||||||||| |
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| T |
43242935 |
agaggattacctgaaagatctgtatctgttcttcgtgcttggctctttga |
43242984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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