View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9315-LTR4-TNT-insertion-5 (Length: 328)
Name: F9315-LTR4-TNT-insertion-5
Description: F9315-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9315-LTR4-TNT-insertion-5 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 318
Target Start/End: Complemental strand, 28325642 - 28325332
Alignment:
| Q |
8 |
ataacatgcacgtcgaaacggaacgaccaggagggagaaacttgttgttgctgggaataatagaaacagcaccaccgtatcttcttcttaacattgataa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28325642 |
ataacatgcacgtcgaaacggaacgaccaggagggagaaacttgttgttgctgggaataatagaaacagcaccaccgtatcttcttcttaacattgataa |
28325543 |
T |
|
| Q |
108 |
caacattgtattgcactgcacagcacaacagttagaaaaatgtaacctaaataaatatatattcagtcagggatatattagggtaaaagaaaattacaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28325542 |
caacattgtattgcactgcacagcacaacagttagaaaaatgtaacctaaataaatatatattcagtcagggatatattagggtaaaagaaaattacaaa |
28325443 |
T |
|
| Q |
208 |
cataaccttgtttcagttgtgttcaagcgacaggacaggacatgacacttcccagttcacttgagtttgagtttagtttagggcacctttagggttttcc |
307 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28325442 |
cataaccttgtttcagttgtgttcaagcgacaggacaggacatgacacttcccagttcacttgagtttgagtttagtttagggcacctttagggttttcc |
28325343 |
T |
|
| Q |
308 |
aaaacaaatta |
318 |
Q |
| |
|
||||||||||| |
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|
| T |
28325342 |
aaaacaaatta |
28325332 |
T |
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