View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9315-LTR4-TNT-insertion-7 (Length: 530)
Name: F9315-LTR4-TNT-insertion-7
Description: F9315-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9315-LTR4-TNT-insertion-7 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 10 - 520
Target Start/End: Original strand, 42817536 - 42818046
Alignment:
| Q |
10 |
aagcacttaattatactatgatataccttagcagccattgtccttgcagttgcccattttgaaatagctgattcagatttatcagagtcaaaatgtgata |
109 |
Q |
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| T |
42817536 |
aagcacttaattaaactatgatataccttagcagccattgtccttgcagttgcccattttgaaatagctgattcagatttatcagagtcaaaatgtgata |
42817635 |
T |
|
| Q |
110 |
tcaagcacttttgaaaagcagaagtttctgaacccgtccacctgaagcagtgaacaaacttaagaatccattttggaaagtacaataagcagcactaatc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42817636 |
tcaagcacttttgaaaagcagaagtttctgaacccgtccacctgaagcagtgaacaaacttaagaatccattttggaaagtacaataagcagcactaatc |
42817735 |
T |
|
| Q |
210 |
actcactcataacttaaatattggattgcactaaccatagctcctcgcaaacaacggacaaatctgctaaatatcttcgaatcctataactcttgtaaac |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42817736 |
actcactcataacttaaatattggattgcactaaccatagctcctcgcaaacaacggccaaatctgctaaatatcttcgaatcctataactcttgtaaac |
42817835 |
T |
|
| Q |
310 |
tttctgcagctttgtcgcagctaaatcacggtcagaatcagtaaatggagaagaaaataacatcactacttctggttttttcggtaacaaagagtcctca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42817836 |
tttctgcagctttgtcgcagctaaatcacggtcagaatcagtaaatggagaagaaaataacatcactacttctggttttttcggtaacaaagagtcctca |
42817935 |
T |
|
| Q |
410 |
acttcatcttctgtatcagaattattctgtactagatatttgcgtgacaatgctaccttcaagcctatacactcttcttcaatagtaggcttatagaaag |
509 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42817936 |
acttcatcttctgtatcagaattattctgtactagatatttgcatgacaatgctaccttcaagcctatacactcttcttcaatagtaggcttatagaaag |
42818035 |
T |
|
| Q |
510 |
tattgaaatta |
520 |
Q |
| |
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||||||||||| |
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| T |
42818036 |
tattgaaatta |
42818046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 6006263 - 6006315
Alignment:
| Q |
270 |
aatctgctaaatatcttcgaatcctataactcttgtaaactttctgcagcttt |
322 |
Q |
| |
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||||||| |||| ||||| | |||||||||||||||||||||||||||||||| |
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| T |
6006263 |
aatctgccaaatttcttctagtcctataactcttgtaaactttctgcagcttt |
6006315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 6005736 - 6005812
Alignment:
| Q |
33 |
taccttagcagccattgtccttgcagttgcccattttgaaatagctgattcagatttatcagagtcaaaatgtgata |
109 |
Q |
| |
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||||||||||||||| ||||| || | ||||||||||||| ||||| ||| | |||| | || ||||||||||||| |
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| T |
6005736 |
taccttagcagccatagtcctagctctagcccattttgaaagagctgtttctgttttaactgaatcaaaatgtgata |
6005812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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