View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9315-LTR4-TNT-insertion-8 (Length: 511)

Name: F9315-LTR4-TNT-insertion-8
Description: F9315-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9315-LTR4-TNT-insertion-8
F9315-LTR4-TNT-insertion-8
[»] chr4 (5 HSPs)
chr4 (9-501)||(44849263-44849755)
chr4 (51-242)||(44863776-44863968)
chr4 (62-242)||(44881675-44881858)
chr4 (60-163)||(44837796-44837899)
chr4 (9-137)||(44898096-44898224)
[»] chr3 (1 HSPs)
chr3 (67-122)||(12926730-12926785)


Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 9 - 501
Target Start/End: Complemental strand, 44849755 - 44849263
Alignment:
Q  9 ctgccacctcataccattagtccctgaattactgccatttgtagcagactctgcaaactcatataacccacgatataaagcaaacccgggatataactcc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44849755 ctgccacctcataccattagtccctgaattactgccatttgtagcagactctgcaaactcatataacccacgatataaagcaaacccgggatataactcc 44849656  T
Q  109 atacaaatgatccattctcctgcagaaatagcgcaggaaatcaacacgttagaaggtaagaagttgacaaagaggcatgtgatacatataaagatgctga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44849655 atacaaatgatccattctcctgcagaaatagcgcaggaaatcaacacgttagaaggtaagaagctgacaaagaggcatgtgatacatataaagatgctga 44849556  T
Q  209 tatgtggtctatgtagataaaacttctaatcatttttatcatatcatatcattccattttttacagtttgtagagaatcaaataatttctgatttgtaaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44849555 tatgtggtctatgtagataaaacttctaatcatttttatcatatcatatcattccattttttacagtttgtagagaatcaaataatttctgatttgtaaa 44849456  T
Q  309 tgaaaactgataagctatacatgcttaattgcaaactttgtattataagcacagaacattcaagatcctttggtgtttttgaatcttcatagtgatggtc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44849455 tgaaaactgataagctatacatgcttaattgcaaactttgtattataagcacagaacattcaagatcttttggtgtttttgaatcttcatagtgatggtc 44849356  T
Q  409 atcctctttctctatttccttgtcctcatcctcttgtttctattgccttacccatttaaggcgaggactacttaaatcttatatctctaatta 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44849355 atcctctttctctatttccttgtcctcatcctcttgtttctattgccttacccatttaaggcgaggactacttaaatcttatatctctaatta 44849263  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 51 - 242
Target Start/End: Complemental strand, 44863968 - 44863776
Alignment:
Q  51 agcagactctgcaaactcatataacccacgatataaagcaaacccgggatataactccatacaaatgatccattctcctgcagaaatagcgcaggaaatc 150  Q
    |||||||| |||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||  || |||||    
T  44863968 agcagactgtgcaaattcatataacccacgatataaagaaaacccgggatacaactccatacaaatgatccatcctcctgcagaaatagcatagaaaatc 44863869  T
Q  151 aacacgttagaaggtaagaagttgacaaagaggcatgtgatacatataaagatg-ctgatatgtggtctatgtagataaaacttctaatcatt 242  Q
    |||| | |||||||| ||||  || |||||||||||||||||||| |||| ||| |||||||| | |||||||| | |||||| |||||||||    
T  44863868 aacatgctagaaggttagaaactgtcaaagaggcatgtgatacatctaaaaatgactgatatgagatctatgtaaaaaaaactactaatcatt 44863776  T

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Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 62 - 242
Target Start/End: Complemental strand, 44881858 - 44881675
Alignment:
Q  62 caaactcatataacccacgatataaagcaaacccgggatataactccatacaaatgatccattctcctgcagaaatagcgcaggaaatcaacacgttaga 161  Q
    |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||  ||||||| |||||  ||||    
T  44881858 caaactcatacaacccacgatataaagcaaacccaggatacaactccatacaaatgatccatcctcctgcagaaatagcataggaaataaacacactaga 44881759  T
Q  162 aggtaagaagtt-gacaaaga-ggcatgtgatacatataaagatg-ctgatatgtggtctatgtagataaaacttctaatcatt 242  Q
    |||| ||||||| || | ||| |||||| ||||||| |||| ||| |||||||| | ||| |||| |||||||| |||||||||    
T  44881758 aggttagaagttggaaatagagggcatgcgatacatctaaaaatgactgatatgagatctgtgtaaataaaactcctaatcatt 44881675  T

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Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 44837899 - 44837796
Alignment:
Q  60 tgcaaactcatataacccacgatataaagcaaacccgggatataactccatacaaatgatccattctcctgcagaaatagcgcaggaaatcaacacgtta 159  Q
    |||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||  ||||||||||||||||| |||||||||||| | ||    
T  44837899 tgcaaactcatacaacccacgatataaagcaaacccaggatacaattccatacaaatgatccagcctcctgcagaaatagcgtaggaaatcaacaggcta 44837800  T
Q  160 gaag 163  Q
    ||||    
T  44837799 gaag 44837796  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 44898224 - 44898096
Alignment:
Q  9 ctgccacctcataccattagtccctgaattactgccatttgtagcagactctgcaaactcatataacccacgatataaagcaaacccgggatataactcc 108  Q
    |||||||| |||||||  ||||||   |||||||||  | || ||||||| | |||||||||| |||||||||||||||||||| |||||||| ||||||    
T  44898224 ctgccaccgcataccaacagtccccatattactgccgctggtggcagactgtccaaactcatacaacccacgatataaagcaaatccgggatacaactcc 44898125  T
Q  109 atacaaatgatccattctcctgcagaaat 137  Q
    ||||||||||||||| |||||||| ||||    
T  44898124 atacaaatgatccatcctcctgcataaat 44898096  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 12926730 - 12926785
Alignment:
Q  67 tcatataacccacgatataaagcaaacccgggatataactccatacaaatgatcca 122  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  12926730 tcatataacccacgatataaagcaaacccaggatataactccataacaatgatcca 12926785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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