View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9316-LTR4-TNT-insertion-1 (Length: 379)
Name: F9316-LTR4-TNT-insertion-1
Description: F9316-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9316-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 369
Target Start/End: Original strand, 28321941 - 28322300
Alignment:
| Q |
10 |
ttgaaccattaagaaaaactatttgttgaacctatttgaacgtaacnnnnnnnctctattgaagcaatatgatatacaaagtaccatatcatatacatac |
109 |
Q |
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| T |
28321941 |
ttgaaccattaagaaaaactatttgttgaacctatttgaacgtaactttttttctctattgaagcaatatgatatacaaagtaccatatcatatacatac |
28322040 |
T |
|
| Q |
110 |
nnnnnnnnnnttcttaccatgtgtggccatcacgacgaaatatatcagatttagatccaagcttcaacaatgccatttattgcagcttagttaacataga |
209 |
Q |
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| T |
28322041 |
aaaaaaaaaattcttaccatgtgtggccatcacgacgaaatatatcagatttagatccaagcttcaacaatgccatttattgcagcttagttaacataga |
28322140 |
T |
|
| Q |
210 |
ttgaaatgtgagtgaaattgagacatataattgttgtatcaagaacagaaaggtgaaaagaaaaaacatgcatgcaaaagaattaggaaaattgttgaga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
28322141 |
ttgaaatgtgagtgaaattgagacatataattgttgtatcaagaacagaaaggtgaaatgaaaaaacatgcatgcaagagaattaggaaaattgttgaga |
28322240 |
T |
|
| Q |
310 |
ttgtgttgtggagtgagagatgagagcatagtggaattattacattgtgatttgtgatta |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28322241 |
ttgtgttgtggagtgagagatgagagcatagtggaattattacattgtgatttgtgatta |
28322300 |
T |
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