View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9316-LTR4-TNT-insertion-2 (Length: 398)
Name: F9316-LTR4-TNT-insertion-2
Description: F9316-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9316-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 85 - 388
Target Start/End: Original strand, 8190750 - 8191053
Alignment:
| Q |
85 |
tctacagctttagtacttgtgaaagtgatgtagatagtgaatatccaaatgaaacaactgagaacccgtgtattcagctatttcattcaatagaataaat |
184 |
Q |
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| T |
8190750 |
tctacagctttagtacttgtgaaagtgatgtagatagtgaatatccaaatgaaacaactgagaacccgtgtattcagctatttcattcaatagaataaat |
8190849 |
T |
|
| Q |
185 |
tttttaaaaaagaatcaagtaagagattatatgttccttaagattatgccctttaatatttttgctacagggtggaaagttacctttgtaagcttgataa |
284 |
Q |
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| T |
8190850 |
tttttaaaaaagaatcaaataagagattatatgttccttaagattatgccctttaatatttttgctacagggtggaaagttacctttgtaagcttgataa |
8190949 |
T |
|
| Q |
285 |
gacatttcacaaccagatcagaaaacttctgatttctggtagcaaatgactcatttggtgcaggtgaaggccaccttgatggatctagtggacgtaaaag |
384 |
Q |
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| T |
8190950 |
gacatttcacaaccagatcagaaaacttctgatttctggtagcaaatgactcatttggtgcaggtgaaggccaccttgatggatctagtggacgtaaaag |
8191049 |
T |
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| Q |
385 |
atta |
388 |
Q |
| |
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|||| |
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| T |
8191050 |
atta |
8191053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 236 - 388
Target Start/End: Original strand, 42348715 - 42348867
Alignment:
| Q |
236 |
tttaatatttttgctacagggtggaaagttacctttgtaagcttgataagacatttcacaaccagatcagaaaacttctgatttctggtagcaaatgact |
335 |
Q |
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||||| ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
42348715 |
tttaagatttttgctactgggtggcaagttacctttgtaagcttgataaggcatttcacaaccagatcagaaaacttctggtttctggtagcaagtgact |
42348814 |
T |
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| Q |
336 |
catttggtgcaggtgaaggccaccttgatggatctagtggacgtaaaagatta |
388 |
Q |
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| T |
42348815 |
catttggtgcaggtgaaggccacctcgatggatctagcggacgtaaaagatta |
42348867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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