View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9316-LTR4-TNT-insertion-3 (Length: 182)

Name: F9316-LTR4-TNT-insertion-3
Description: F9316-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9316-LTR4-TNT-insertion-3
F9316-LTR4-TNT-insertion-3
[»] chr4 (38 HSPs)
chr4 (10-172)||(1107157-1107319)
chr4 (115-172)||(49111417-49111474)
chr4 (116-172)||(2125855-2125911)
chr4 (116-172)||(4896646-4896702)
chr4 (116-172)||(10128079-10128135)
chr4 (116-172)||(11348342-11348398)
chr4 (116-172)||(28845976-28846032)
chr4 (116-172)||(36455905-36455961)
chr4 (114-172)||(31473845-31473903)
chr4 (116-172)||(857344-857400)
chr4 (120-172)||(4896737-4896789)
chr4 (116-172)||(14982278-14982334)
chr4 (116-172)||(15660288-15660344)
chr4 (109-172)||(41498595-41498658)
chr4 (118-172)||(7352917-7352971)
chr4 (118-172)||(15660183-15660237)
chr4 (119-172)||(4441338-4441391)
chr4 (115-172)||(16516168-16516225)
chr4 (120-172)||(7352814-7352866)
chr4 (116-172)||(11040966-11041021)
chr4 (121-172)||(10633035-10633086)
chr4 (118-172)||(1112605-1112659)
chr4 (126-172)||(1539649-1539695)
chr4 (120-170)||(42844650-42844700)
chr4 (114-172)||(55266880-55266938)
chr4 (118-167)||(31742874-31742923)
chr4 (120-172)||(10127976-10128028)
chr4 (120-172)||(26250911-26250963)
chr4 (115-153)||(26251015-26251053)
chr4 (126-172)||(28845879-28845925)
chr4 (118-172)||(36456031-36456085)
chr4 (115-172)||(41498486-41498544)
chr4 (120-165)||(42542979-42543024)
chr4 (116-172)||(5715742-5715798)
chr4 (120-172)||(19461755-19461807)
chr4 (120-172)||(31742778-31742830)
chr4 (116-172)||(35470120-35470176)
chr4 (118-153)||(14982385-14982420)
[»] chr5 (45 HSPs)
chr5 (115-172)||(22766949-22767006)
chr5 (116-172)||(37722910-37722966)
chr5 (118-172)||(9764338-9764392)
chr5 (118-172)||(15374065-15374119)
chr5 (110-172)||(26281285-26281347)
chr5 (118-172)||(40643922-40643976)
chr5 (120-172)||(2721576-2721628)
chr5 (116-172)||(9764443-9764499)
chr5 (116-172)||(22303886-22303942)
chr5 (120-172)||(28828369-28828421)
chr5 (118-172)||(2316378-2316432)
chr5 (118-172)||(6634015-6634069)
chr5 (113-167)||(13243514-13243568)
chr5 (118-172)||(15804322-15804376)
chr5 (118-172)||(40809341-40809395)
chr5 (119-172)||(3563278-3563331)
chr5 (119-172)||(20523238-20523291)
chr5 (116-172)||(15373958-15374014)
chr5 (120-172)||(15804399-15804451)
chr5 (120-172)||(28828452-28828504)
chr5 (118-172)||(927302-927356)
chr5 (118-172)||(25935306-25935360)
chr5 (118-172)||(32470882-32470936)
chr5 (118-172)||(40090430-40090484)
chr5 (118-172)||(41762231-41762285)
chr5 (128-172)||(13243469-13243513)
chr5 (120-172)||(19533923-19533975)
chr5 (116-172)||(20523131-20523187)
chr5 (116-172)||(23091961-23092016)
chr5 (118-169)||(23092070-23092121)
chr5 (119-166)||(33245394-33245441)
chr5 (118-172)||(16515123-16515177)
chr5 (118-172)||(32250114-32250167)
chr5 (118-172)||(32390077-32390131)
chr5 (118-172)||(34982216-34982269)
chr5 (126-172)||(37145517-37145563)
chr5 (111-172)||(2316484-2316544)
chr5 (116-153)||(33146059-33146096)
chr5 (116-153)||(33146189-33146226)
chr5 (120-172)||(32389974-32390026)
chr5 (116-172)||(35379342-35379397)
chr5 (116-172)||(40809446-40809502)
chr5 (118-153)||(2550328-2550363)
chr5 (126-161)||(9894349-9894384)
chr5 (118-153)||(22305112-22305147)
[»] chr2 (30 HSPs)
chr2 (112-172)||(784898-784958)
chr2 (116-172)||(41461620-41461676)
chr2 (118-172)||(14365700-14365754)
chr2 (110-172)||(45094490-45094552)
chr2 (111-172)||(17180290-17180351)
chr2 (120-172)||(11532272-11532324)
chr2 (120-172)||(11793897-11793949)
chr2 (116-172)||(14365804-14365860)
chr2 (126-172)||(11684607-11684653)
chr2 (126-172)||(11716504-11716550)
chr2 (118-172)||(14537199-14537253)
chr2 (118-172)||(27033490-27033544)
chr2 (116-172)||(1583828-1583884)
chr2 (116-172)||(10244175-10244231)
chr2 (116-172)||(11716406-11716462)
chr2 (124-172)||(30698287-30698335)
chr2 (120-172)||(41461517-41461569)
chr2 (109-172)||(7228031-7228094)
chr2 (118-172)||(769036-769090)
chr2 (118-172)||(3092282-3092336)
chr2 (118-172)||(10480119-10480173)
chr2 (118-172)||(11141305-11141359)
chr2 (118-172)||(33189276-33189330)
chr2 (126-172)||(40026072-40026118)
chr2 (116-172)||(35047698-35047754)
chr2 (120-172)||(44256212-44256263)
chr2 (121-172)||(28740599-28740650)
chr2 (116-153)||(14537305-14537342)
chr2 (116-172)||(8735842-8735898)
chr2 (116-172)||(13017777-13017833)
[»] scaffold1562 (2 HSPs)
scaffold1562 (118-172)||(405-459)
scaffold1562 (120-172)||(510-562)
[»] scaffold1158 (2 HSPs)
scaffold1158 (118-172)||(2134-2188)
scaffold1158 (120-172)||(2031-2083)
[»] chr8 (31 HSPs)
chr8 (115-172)||(44889351-44889408)
chr8 (116-172)||(14800065-14800121)
chr8 (113-172)||(33902662-33902721)
chr8 (118-172)||(33377326-33377380)
chr8 (111-172)||(4156272-4156333)
chr8 (115-172)||(37268112-37268169)
chr8 (116-172)||(3853614-3853670)
chr8 (116-172)||(3858072-3858128)
chr8 (112-172)||(42711385-42711445)
chr8 (118-172)||(17110869-17110923)
chr8 (115-172)||(13404824-13404881)
chr8 (107-172)||(44346707-44346772)
chr8 (116-172)||(17110974-17111030)
chr8 (116-172)||(24044958-24045014)
chr8 (116-172)||(28324691-28324747)
chr8 (116-172)||(29257380-29257436)
chr8 (133-172)||(8049269-8049308)
chr8 (109-172)||(40046795-40046858)
chr8 (118-172)||(14991692-14991746)
chr8 (112-169)||(515564-515621)
chr8 (120-172)||(3853721-3853773)
chr8 (120-172)||(3858179-3858231)
chr8 (128-172)||(13404932-13404976)
chr8 (120-172)||(29482836-29482888)
chr8 (118-166)||(32626069-32626117)
chr8 (118-172)||(23011734-23011788)
chr8 (118-172)||(36103101-36103155)
chr8 (118-163)||(27322687-27322732)
chr8 (116-153)||(29611386-29611423)
chr8 (116-153)||(34008797-34008834)
chr8 (118-153)||(14799979-14800014)
[»] chr3 (38 HSPs)
chr3 (115-172)||(46672821-46672878)
chr3 (118-172)||(5415783-5415837)
chr3 (118-172)||(49457343-49457397)
chr3 (115-172)||(37321547-37321604)
chr3 (116-172)||(36398007-36398063)
chr3 (116-172)||(44692820-44692876)
chr3 (116-172)||(47767430-47767486)
chr3 (118-172)||(5415888-5415942)
chr3 (118-172)||(9129449-9129503)
chr3 (118-172)||(9137556-9137610)
chr3 (118-172)||(27251999-27252053)
chr3 (118-172)||(42005971-42006025)
chr3 (118-172)||(44436258-44436312)
chr3 (118-172)||(44692927-44692981)
chr3 (116-172)||(30767102-30767158)
chr3 (116-172)||(37054392-37054448)
chr3 (116-172)||(46429501-46429557)
chr3 (116-172)||(47284331-47284387)
chr3 (118-172)||(671637-671691)
chr3 (118-172)||(9129344-9129398)
chr3 (118-172)||(9137451-9137505)
chr3 (126-172)||(21307550-21307596)
chr3 (126-172)||(35279920-35279966)
chr3 (118-172)||(46001364-46001418)
chr3 (116-172)||(28092212-28092268)
chr3 (120-172)||(42130694-42130746)
chr3 (116-172)||(53470447-53470503)
chr3 (115-162)||(2732636-2732683)
chr3 (118-172)||(7302346-7302400)
chr3 (134-172)||(31070422-31070460)
chr3 (118-172)||(34088571-34088625)
chr3 (120-166)||(39215949-39215995)
chr3 (126-172)||(44288477-44288523)
chr3 (116-153)||(46429412-46429449)
chr3 (116-153)||(47284222-47284259)
chr3 (116-172)||(31070511-31070567)
chr3 (116-172)||(48947603-48947659)
chr3 (125-172)||(19475823-19475870)
[»] chr7 (30 HSPs)
chr7 (116-172)||(2057500-2057556)
chr7 (118-172)||(40110737-40110791)
chr7 (118-172)||(43955517-43955571)
chr7 (114-172)||(43955619-43955677)
chr7 (116-172)||(6498770-6498826)
chr7 (116-172)||(26162142-26162198)
chr7 (116-172)||(28539173-28539229)
chr7 (117-172)||(18789251-18789306)
chr7 (116-167)||(34398959-34399010)
chr7 (118-172)||(2057395-2057449)
chr7 (118-172)||(31632722-31632776)
chr7 (114-172)||(35455800-35455858)
chr7 (111-172)||(29065812-29065873)
chr7 (116-172)||(5644782-5644838)
chr7 (113-172)||(39342647-39342706)
chr7 (118-172)||(5644677-5644731)
chr7 (118-172)||(14603267-14603321)
chr7 (118-172)||(35776960-35777014)
chr7 (118-172)||(40110843-40110897)
chr7 (119-172)||(9784936-9784989)
chr7 (115-172)||(23548616-23548673)
chr7 (115-172)||(29065924-29065981)
chr7 (116-172)||(23455252-23455308)
chr7 (118-165)||(29195709-29195756)
chr7 (118-168)||(21635885-21635935)
chr7 (126-172)||(21635990-21636036)
chr7 (118-172)||(25189231-25189285)
chr7 (111-153)||(40853980-40854022)
chr7 (109-153)||(31913227-31913271)
chr7 (116-172)||(34388370-34388426)
[»] chr6 (14 HSPs)
chr6 (116-172)||(9285645-9285701)
chr6 (116-172)||(34244999-34245055)
chr6 (118-172)||(6919812-6919866)
chr6 (110-172)||(8574687-8574749)
chr6 (118-172)||(9763117-9763171)
chr6 (116-172)||(29889453-29889509)
chr6 (118-172)||(8574770-8574824)
chr6 (115-172)||(13487272-13487329)
chr6 (109-158)||(33733423-33733472)
chr6 (120-172)||(6919710-6919762)
chr6 (120-172)||(9763014-9763066)
chr6 (118-172)||(28918165-28918219)
chr6 (115-172)||(15299530-15299586)
chr6 (116-172)||(776078-776134)
[»] chr1 (41 HSPs)
chr1 (116-172)||(4038180-4038236)
chr1 (116-172)||(15034764-15034820)
chr1 (120-172)||(28745799-28745851)
chr1 (118-172)||(23536067-23536121)
chr1 (112-172)||(4038069-4038129)
chr1 (116-172)||(24273239-24273295)
chr1 (116-172)||(30190241-30190297)
chr1 (116-172)||(34756425-34756481)
chr1 (120-172)||(34756532-34756584)
chr1 (120-172)||(40264135-40264187)
chr1 (118-173)||(8224768-8224823)
chr1 (118-172)||(15034659-15034713)
chr1 (118-172)||(26501098-26501152)
chr1 (110-172)||(47165231-47165293)
chr1 (115-172)||(6470705-6470762)
chr1 (127-172)||(32573027-32573072)
chr1 (116-172)||(44410309-44410365)
chr1 (116-172)||(45565392-45565448)
chr1 (120-172)||(50005184-50005236)
chr1 (126-172)||(27804273-27804319)
chr1 (118-172)||(27935590-27935644)
chr1 (118-172)||(38277415-38277469)
chr1 (118-172)||(44410416-44410470)
chr1 (116-172)||(25889156-25889211)
chr1 (120-172)||(38277520-38277571)
chr1 (118-166)||(43623003-43623051)
chr1 (121-172)||(37036968-37037019)
chr1 (118-172)||(29446750-29446804)
chr1 (118-172)||(32287952-32288006)
chr1 (126-172)||(37447921-37447967)
chr1 (118-172)||(50005079-50005133)
chr1 (116-153)||(32572938-32572975)
chr1 (116-153)||(34007356-34007393)
chr1 (127-172)||(37448420-37448465)
chr1 (127-172)||(44570687-44570732)
chr1 (118-158)||(5474417-5474457)
chr1 (120-172)||(28632604-28632656)
chr1 (118-153)||(15245460-15245495)
chr1 (112-171)||(31166304-31166363)
chr1 (117-172)||(32652205-32652260)
chr1 (118-153)||(34007441-34007476)
[»] scaffold0009 (2 HSPs)
scaffold0009 (113-172)||(41992-42051)
scaffold0009 (118-172)||(42083-42137)
[»] scaffold0400 (1 HSPs)
scaffold0400 (119-172)||(4517-4570)
[»] scaffold0365 (1 HSPs)
scaffold0365 (119-172)||(5161-5214)
[»] scaffold0048 (1 HSPs)
scaffold0048 (120-172)||(82945-82997)
[»] scaffold0129 (1 HSPs)
scaffold0129 (120-167)||(19200-19247)
[»] scaffold0044 (1 HSPs)
scaffold0044 (126-172)||(56379-56425)
[»] scaffold0318 (1 HSPs)
scaffold0318 (116-172)||(2865-2921)
[»] scaffold0039 (1 HSPs)
scaffold0039 (114-153)||(109045-109084)
[»] scaffold0240 (1 HSPs)
scaffold0240 (116-153)||(17605-17642)
[»] scaffold0301 (1 HSPs)
scaffold0301 (120-172)||(7153-7205)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 10 - 172
Target Start/End: Complemental strand, 1107319 - 1107157
Alignment:
Q  10 tatcaggtattttgattttagtctctttaaaacaatggtttcaattcttacaagagtagcgttatatggcacgaacaactttgccacttcatttgcatga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1107319 tatcaggtattttgattttagtctctttaaaacaatggtttcaattcttacaagagtagcgttatatggcacgaacaactttgccacttcatttgcatga 1107220  T
Q  110 atacctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1107219 atacctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 1107157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 49111474 - 49111417
Alignment:
Q  115 tttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  49111474 tttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 49111417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 2125855 - 2125911
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||||||||||||||||||||||| || |||||||||||||||    
T  2125855 ttagagtgtgtttggatgggggaatattttgagggaatgtattgttttgagggaatt 2125911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 4896646 - 4896702
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||    
T  4896646 ttagagtgtgtttggatgggggaatattttgaggtaatgtaatgttttgagggaatt 4896702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 10128135 - 10128079
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||    
T  10128135 ttagagtgtatttggatgggggaatgttttgagagaatgtaatgttttgagggaatt 10128079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 11348398 - 11348342
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||    
T  11348398 ttagagtgtatttggatgggggaatgttttaagggaatgtaatgttttgagggaatt 11348342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 28846032 - 28845976
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||    
T  28846032 ttagagtgtgtttggatggggaaatgttttgagggaatataatgttttgagggaatt 28845976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 36455905 - 36455961
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  36455905 ttagagtgtgtttggatgggggaatgttttgagggaatctaatgttttgagggaatt 36455961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 31473845 - 31473903
Alignment:
Q  114 ctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  31473845 ctttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaatt 31473903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 857400 - 857344
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  857400 ttagagtgtgtttggatggggaaatgttttgagggaatgtaatgttttgagggaatt 857344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 4896789 - 4896737
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  4896789 agtgtgtttggatggggaaatattttgagggaatgtaatgttttgagggaatt 4896737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 14982278 - 14982334
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  14982278 ttagagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 14982334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 15660344 - 15660288
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||    
T  15660344 ttagagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaatt 15660288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 41498658 - 41498595
Alignment:
Q  109 aatacctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||| ||| ||||||| ||||||||| |||||||||||||||||| ||||||||||| ||||||    
T  41498658 aatatcttaagagtgtgtttggatggaggaatattttgagggaatgtaatgttttgaaggaatt 41498595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 7352971 - 7352917
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  7352971 agagtgtgtttggatggggaaatgttttgagggaatgtaatgttttgagggaatt 7352917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 15660183 - 15660237
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||    
T  15660183 agagtgtgtttggataggggaatattttgaggtaatgtaatgttttgagggaatt 15660237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 4441338 - 4441391
Alignment:
Q  119 gagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  4441338 gagtgtgtttggatggtggaatgttttgagggaatgtaatgttttgagggaatt 4441391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 16516168 - 16516225
Alignment:
Q  115 tttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||| ||||||||||||||| |||||| ||||| ||||||||||| ||||||    
T  16516168 tttagagtgtgtttggatgggggaatgttttgacggaatgtaatgttttgaaggaatt 16516225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 7352814 - 7352866
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||    
T  7352814 agtgtgtttggatgggggaatgttttgagggaatgtaatgttttgatggaatt 7352866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 11040966 - 11041021
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||| |||||||||||||||| |||||||||||| |||||    
T  11040966 ttagagtgtgtttggatgggg-aatattttgagggaatgtaatgttttgagagaatt 11041021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 10633035 - 10633086
Alignment:
Q  121 gtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||| ||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  10633035 gtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaatt 10633086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 1112605 - 1112659
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||| ||| |||||||| |||||||||    
T  1112605 agagtgtgtttggatgggggaatgttttgaggaaatgtaatgtttcgagggaatt 1112659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 1539649 - 1539695
Alignment:
Q  126 tttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  1539649 tttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 1539695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 42844700 - 42844650
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaa 170  Q
    ||||| ||||||||||| |||||||||||| ||| ||||||||||||||||    
T  42844700 agtgtgtttggatggggaaatattttgaggtaatgtaatgttttgagggaa 42844650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 55266938 - 55266880
Alignment:
Q  114 ctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||| |||||||||  |||| |||||||| |||||||| |||||||||||||    
T  55266938 ctttagagtgtgtttggatggatgaatgttttgaggaaatataatattttgagggaatt 55266880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 31742923 - 31742874
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagg 167  Q
    ||||||| ||||||||| ||||| |||||||||||| |||||||||||||    
T  31742923 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagg 31742874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 10127976 - 10128028
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| |||||||||||||||||||||| | ||| ||||||||||| ||||||    
T  10127976 agtgtgtttggatgggggaatattttgaagtaatgtaatgttttgaaggaatt 10128028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 26250911 - 26250963
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| |||||||| ||||||||||||||| ||| ||||||||||||| ||||    
T  26250911 agtgtgtttggatgagggaatattttgaggtaatgtaatgttttgaggaaatt 26250963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 26251053 - 26251015
Alignment:
Q  115 tttagagtgtatttggatgggggaatattttgagggaat 153  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  26251053 tttagagtgtgtttggatgggggaatgttttgagggaat 26251015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 28845879 - 28845925
Alignment:
Q  126 tttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||| |||||||||||| |||||||| |||||||||    
T  28845879 tttggatggaggaatgttttgagggaatgtaatgtttcgagggaatt 28845925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 36456085 - 36456031
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||| ||||| |||||||||||| |||| |||||||| ||||    
T  36456085 agagtgtgtttggatggaggaatgttttgagggaatgtaatattttgaggaaatt 36456031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 41498486 - 41498544
Alignment:
Q  115 tttagagtgtatttggatgggggaatattttgagggaatataatg-ttttgagggaatt 172  Q
    |||||||||| ||||||||||||| | ||||||| ||| |||||| |||||||||||||    
T  41498486 tttagagtgtgtttggatgggggattgttttgagagaaaataatgtttttgagggaatt 41498544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 42543024 - 42542979
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttga 165  Q
    ||||| ||||||||| ||||| |||||||||||| |||||||||||    
T  42543024 agtgtgtttggatggtggaatgttttgagggaatgtaatgttttga 42542979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 5715742 - 5715798
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||| |||||| |||||||  ||| ||||||||||||| ||||    
T  5715742 ttagagtgtgtttggatgagggaatgttttgagataatgtaatgttttgaggtaatt 5715798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 19461807 - 19461755
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||| |||||||||| | ||| |||||||||||| |||||    
T  19461807 agtgtttttggatggggaaatattttgaagtaatgtaatgttttgagcgaatt 19461755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 31742778 - 31742830
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||| |||||||||| ||| | | ||||||||||||||||||    
T  31742778 agtgtgtttggatggaggaatattttaaggtagtgtaatgttttgagggaatt 31742830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 35470120 - 35470176
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||| ||||| | ||| |||||||||||| || |||||||||||||||    
T  35470120 ttagagtgtgtttagatggtgaaatgttttgagggaatgtattgttttgagggaatt 35470176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 14982420 - 14982385
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||| ||||||||||||||| ||||||||||||    
T  14982420 agagtgtgtttggatgggggaatcttttgagggaat 14982385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 7e-20; HSPs: 45)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 22766949 - 22767006
Alignment:
Q  115 tttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  22766949 tttagagtgtgtttggatgggggaatgttttgagggaatataatgttttgagggaatt 22767006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 37722966 - 37722910
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  37722966 ttagagtgtgtttggatgggggaatattttgagggaatgtaatgttttgagggaatt 37722910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 9764338 - 9764392
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  9764338 agagtgtgtttggatgggggaatattttgagggaaagtaatgttttgagggaatt 9764392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 15374119 - 15374065
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  15374119 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 15374065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 26281347 - 26281285
Alignment:
Q  110 atacctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||| |||||||||| ||||||||||||||  |||||||||||| ||||||||||||||||||    
T  26281347 atacttttagagtgtgtttggatgggggaacgttttgagggaatgtaatgttttgagggaatt 26281285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 40643976 - 40643922
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  40643976 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 40643922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 2721628 - 2721576
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  2721628 agtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 2721576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 9764499 - 9764443
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| ||| |||||||| ||||||||||||||||||    
T  9764499 ttagagtgtgtttggatgggggaatgtttcgagggaatgtaatgttttgagggaatt 9764443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 22303942 - 22303886
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||    
T  22303942 ttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaatt 22303886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 28828369 - 28828421
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  28828369 agtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 28828421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 2316378 - 2316432
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| |||| |||||||||||||    
T  2316378 agagtgtgtttggatgggggaatgttttgagggaatgtaatattttgagggaatt 2316432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 6634015 - 6634069
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  6634015 agagtgtgtttggatggggggatattttgaggtaatgtaatgttttgagggaatt 6634069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 13243568 - 13243514
Alignment:
Q  113 cctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagg 167  Q
    |||||| ||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  13243568 cctttatagtgtgtttggatgggggaatattttgaggtaatgtaatgttttgagg 13243514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 15804322 - 15804376
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| || |||||||||||||||    
T  15804322 agagtgtgtttggatgggggaatgttttgagggaatgtagtgttttgagggaatt 15804376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 40809341 - 40809395
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  40809341 agagtgtgtttggatggggaaatgttttgagagaatataatgttttgagggaatt 40809395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 3563278 - 3563331
Alignment:
Q  119 gagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||| ||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  3563278 gagtgtgtttggataggggaatgttttgagggaatgtaatgttttgagggaatt 3563331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 20523291 - 20523238
Alignment:
Q  119 gagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||| ||||||||||||||| ||||||| |||| ||||||||||||||||||    
T  20523291 gagtgtgtttggatgggggaatgttttgagagaatgtaatgttttgagggaatt 20523238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 15373958 - 15374014
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||||  |||| |||||||||||| ||||||||||||||||||    
T  15373958 ttagagtgtgtttggatggaagaattttttgagggaatgtaatgttttgagggaatt 15374014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 15804451 - 15804399
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  15804451 agtgtgtttggatggggaaatgttttgagggaatgtaatgttttgagggaatt 15804399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 28828504 - 28828452
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  28828504 agtgtgtttggatggggaaatattttgaggtaatgtaatgttttgagggaatt 28828452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 927302 - 927356
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||| ||| |||||||||||| || |||||||||||||||    
T  927302 agagtgtgtttggatggggaaatgttttgagggaatgtattgttttgagggaatt 927356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 25935360 - 25935306
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||| ||||| ||||    
T  25935360 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttatgaggaaatt 25935306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 32470882 - 32470936
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||||||||| | ||| |||||||||||| ||||||||||| ||||||    
T  32470882 agagtgtatttggatggagaaatgttttgagggaatgtaatgttttgaaggaatt 32470936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 40090484 - 40090430
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||| ||| ||||||||||| ||||||    
T  40090484 agagtgtgtttggatgggggaatgttttgaggaaatgtaatgttttgatggaatt 40090430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 41762285 - 41762231
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| || |||||| ||||||||    
T  41762285 agagtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaatt 41762231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 13243469 - 13243513
Alignment:
Q  128 tggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||    
T  13243469 tggatgagggaatgttttgagggaatgtaatgttttgagggaatt 13243513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 19533975 - 19533923
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||| ||||| |||||||||||| ||||||| ||||||||||    
T  19533975 agtgtgtttggatggaggaatgttttgagggaatgtaatgttatgagggaatt 19533923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 20523131 - 20523187
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||||| |||| |||||||||||| |||| || ||||||||||    
T  20523131 ttagagtgtgtttggatgggagaatgttttgagggaatgtaatattctgagggaatt 20523187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 23091961 - 23092016
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||| ||||||| |||||||||||||||| ||||||||||| ||||||    
T  23091961 ttagagtgtgttttgatgggg-aatattttgagggaatgtaatgttttgaaggaatt 23092016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 23092121 - 23092070
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgaggga 169  Q
    ||||||| ||||||||||||||| ||||||  |||| |||||||||||||||    
T  23092121 agagtgtgtttggatgggggaatgttttgaacgaatgtaatgttttgaggga 23092070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 33245441 - 33245394
Alignment:
Q  119 gagtgtatttggatgggggaatattttgagggaatataatgttttgag 166  Q
    |||||| ||||||||||||||| |||||| ||||| ||||||||||||    
T  33245441 gagtgtgtttggatgggggaatgttttgatggaatgtaatgttttgag 33245394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 16515177 - 16515123
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||||| | |||| |||| ||||||| ||||||||||||||||||    
T  16515177 agagtgtgtttggatgagagaatgtttttagggaatgtaatgttttgagggaatt 16515123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 32250167 - 32250114
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||| ||| |||||||||||  ||||||||||||||||||    
T  32250167 agagtgtgtttggatgggg-aatgttttgagggaaagtaatgttttgagggaatt 32250114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 32390131 - 32390077
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||||  | |||| |||||||||||| ||||||||||||||||||    
T  32390131 agagtgtgtttggattagagaattttttgagggaatgtaatgttttgagggaatt 32390077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 34982216 - 34982269
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||| ||||||| |||||||||||| | ||||||||||||||||    
T  34982216 agagtgtgtttggataggggaatgttttgagggaatgt-atgttttgagggaatt 34982269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 37145563 - 37145517
Alignment:
Q  126 tttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||||||| |||||||||||| ||||||| |||| |||||    
T  37145563 tttggatgggggaatgttttgagggaatgtaatgttatgagagaatt 37145517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 2316544 - 2316484
Alignment:
Q  111 tacctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||||||| |||||||||   ||| |||||||||||| |||||||||||| |||||    
T  2316544 tacctttagagtgtgtttggatggaa-aatgttttgagggaatgtaatgttttgagagaatt 2316484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 33146059 - 33146096
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  33146059 ttagagtgtgtttggatgggggaatgttttgagggaat 33146096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 33146189 - 33146226
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  33146189 ttagagtgtgtttggatgggggaatgttttgagggaat 33146226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 32389974 - 32390026
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| |||||||| |||||| |||||| ||||| |||| |||||||||||||    
T  32389974 agtgtgtttggatgagggaatgttttgaaggaatgtaatattttgagggaatt 32390026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 35379342 - 35379397
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||| ||| |||||||  ||| ||||||||||||||||||    
T  35379342 ttagagtgtgtttggatgggg-aatgttttgagataatgtaatgttttgagggaatt 35379397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 40809502 - 40809446
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||| ||||||| ||| ||||||| |||| |||||||||||| |||||    
T  40809502 ttagagtgtgtttagatggggaaatgttttgagagaatgtaatgttttgagtgaatt 40809446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 2550328 - 2550363
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||| ||||||||||||||| ||||||||||||    
T  2550328 agagtgtgtttggatgggggaatgttttgagggaat 2550363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 9894384 - 9894349
Alignment:
Q  126 tttggatgggggaatattttgagggaatataatgtt 161  Q
    ||||||||||||||| |||||||||||| |||||||    
T  9894384 tttggatgggggaatgttttgagggaatgtaatgtt 9894349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 22305112 - 22305147
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||| ||||||||||||||| ||||||||||||    
T  22305112 agagtgtgtttggatgggggaatgttttgagggaat 22305147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 784958 - 784898
Alignment:
Q  112 acctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  784958 acctttagagtgtgtttggatgggggaatattttgatggaatgtaatgttttgagggaatt 784898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 41461676 - 41461620
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  41461676 ttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 41461620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 14365700 - 14365754
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  14365700 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 14365754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 45094552 - 45094490
Alignment:
Q  110 atacctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||| |||| ||| |||||| |||||||||||||||||||||||||||||||    
T  45094552 ataccattagagtgtgtttgaatgagggaatgttttgagggaatataatgttttgagggaatt 45094490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 17180290 - 17180351
Alignment:
Q  111 tacctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||| ||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||    
T  17180290 taccttaagagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaatt 17180351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 11532324 - 11532272
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||||||    
T  11532324 agtgtgtttggatgggggaatatttggagggaatgtaatgttttgagggaatt 11532272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 11793897 - 11793949
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| |||||||||||||||||||||||||||| ||||||| ||||||||||    
T  11793897 agtgtgtttggatgggggaatattttgagggaatgtaatgttatgagggaatt 11793949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 14365860 - 14365804
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  14365860 ttagagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 14365804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 11684607 - 11684653
Alignment:
Q  126 tttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  11684607 tttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 11684653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 11716550 - 11716504
Alignment:
Q  126 tttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  11716550 tttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 11716504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 14537199 - 14537253
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||||||||| ||||    
T  14537199 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggtaatt 14537253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 27033490 - 27033544
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| ||||||| |||| ||||||||||||||||||    
T  27033490 agagtgtgtttggatgggggaatgttttgagagaatgtaatgttttgagggaatt 27033544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 1583884 - 1583828
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||||||| || |||||| ||||||||    
T  1583884 ttagagtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaatt 1583828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 10244175 - 10244231
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||||| ||||||| ||||||||  ||||||||||||||||||    
T  10244175 ttagagtgtgtttggatgggagaatattctgagggaaagtaatgttttgagggaatt 10244231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 11716406 - 11716462
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||||  |||| |||||||||||| ||||||||||||||||||    
T  11716406 ttagagtgtgtttggatggaagaatgttttgagggaatgtaatgttttgagggaatt 11716462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 30698287 - 30698335
Alignment:
Q  124 tatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||||||||| |||||||||||| ||||||||||| ||||||    
T  30698287 tatttggatgggggaatgttttgagggaatgtaatgttttgaaggaatt 30698335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 41461517 - 41461569
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  41461517 agtgtgtttggatggggaaatattttgaggtaatgtaatgttttgagggaatt 41461569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 7228094 - 7228031
Alignment:
Q  109 aatacctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||| ||||||| ||||||||||| ||| ||||||| |||| ||||||||||| ||||||    
T  7228094 aataccttaagagtgtgtttggatggggaaatgttttgagagaatgtaatgttttgaaggaatt 7228031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 769036 - 769090
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| || |||||| ||||||||    
T  769036 agagtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaatt 769090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 3092282 - 3092336
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||||||||| ||||| |||||||||||| || |||||||||| ||||    
T  3092282 agagtgtatttggatggaggaatgttttgagggaatgtattgttttgaggaaatt 3092336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 10480119 - 10480173
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| |||||||  |||||||||    
T  10480119 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttacgagggaatt 10480173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 11141305 - 11141359
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| || |||||| ||||||||    
T  11141305 agagtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaatt 11141359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 33189330 - 33189276
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| || |||||| ||||||||    
T  33189330 agagtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaatt 33189276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 40026072 - 40026118
Alignment:
Q  126 tttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||| ||||||||||||||||||| ||||||||||||||||| ||||    
T  40026072 tttgaatgggggaatattttgaggtaatataatgttttgaggaaatt 40026118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 35047754 - 35047698
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||| ||| || |||||| ||||||||    
T  35047754 ttagagtgtgtttggatgggggaatgttttgaggaaatgtattgttttaagggaatt 35047698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 44256263 - 44256212
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  44256263 agtgtgtttggatgggggaatattt-gaggtaatgtaatgttttgagggaatt 44256212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 28740599 - 28740650
Alignment:
Q  121 gtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||| |||| |||||| ||| |||||||||||| ||||||||||||||||||    
T  28740599 gtgtgtttgaatggggaaatgttttgagggaatgtaatgttttgagggaatt 28740650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 14537342 - 14537305
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  14537342 ttagagtgtgtttggatgggggaatgttttgagggaat 14537305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 8735842 - 8735898
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||   || ||||||||||||||||||||  |||||||||    
T  8735842 ttagagtgtgtttggatgggaacatgttttgagggaatataatgttacgagggaatt 8735898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 13017777 - 13017833
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||| || ||| |||||||||||| |||| |||| ||||||||    
T  13017777 ttagagtgtgtttggatgtggaaatgttttgagggaatgtaatattttaagggaatt 13017833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 47; Significance: 4e-18; HSPs: 2)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 405 - 459
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  405 agagtgtgtttggatgggggaatattttgagggaaaataatgttttgagggaatt 459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 562 - 510
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  562 agtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 47; Significance: 4e-18; HSPs: 2)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 2188 - 2134
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  2188 agagtgtgtttggatgggggaatattttgagggaaaataatgttttgagggaatt 2134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 2031 - 2083
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  2031 agtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 2083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 44889351 - 44889408
Alignment:
Q  115 tttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  44889351 tttagagtgtgtttggatggaggaatgttttgagggaatataatgttttgagggaatt 44889408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 14800121 - 14800065
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  14800121 ttagagtgtgtttggatgggggaatattttgagggaaagtaatgttttgagggaatt 14800065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 33902662 - 33902721
Alignment:
Q  113 cctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  33902662 cctttagagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 33902721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 33377380 - 33377326
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||    
T  33377380 agagtgtgtttggatgggggaatgttttgagggaatatattgttttgagggaatt 33377326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 4156333 - 4156272
Alignment:
Q  111 tacctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||| | ||||| |||||||||| ||||||||||||||||| ||||||||||||||||||    
T  4156333 taccttaatagtgtgtttggatgggagaatattttgagggaatgtaatgttttgagggaatt 4156272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 37268169 - 37268112
Alignment:
Q  115 tttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||    
T  37268169 tttagagtgtgtttggataggggaatattttgaggtaatgtaatgttttgagggaatt 37268112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 3853614 - 3853670
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||||| ||||    
T  3853614 ttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggaaatt 3853670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 3858072 - 3858128
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||||| ||||    
T  3858072 ttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggaaatt 3858128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 42711445 - 42711385
Alignment:
Q  112 acctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||| ||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  42711445 accttaagagtgtgtttggattggggaatgttttgagggaatgtaatgttttgagggaatt 42711385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 17110869 - 17110923
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  17110869 agagtgtgtttggatggggaaatgttttgagggaatgtaatgttttgagggaatt 17110923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 13404824 - 13404881
Alignment:
Q  115 tttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||| ||||| ||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  13404824 tttatagtgtgtttggatggggaaatattttgaggtaatgtaatgttttgagggaatt 13404881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 44346772 - 44346707
Alignment:
Q  107 tgaatacctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||| ||||||| ||| ||||||||||||||| |||||||||||| || |||||| ||||||||    
T  44346772 tgaataactttagaatgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaatt 44346707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 17111030 - 17110974
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||| | ||| |||||||||||| ||||||||||||||||||    
T  17111030 ttagagtgtgtttggatggagaaatgttttgagggaatgtaatgttttgagggaatt 17110974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 24044958 - 24045014
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||| |||||| |||||||||||| ||||||||||| ||||||    
T  24044958 ttagagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgaaggaatt 24045014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 28324747 - 28324691
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||| ||||| |||||||||||| ||||||||||| ||||||    
T  28324747 ttagagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgaaggaatt 28324691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 29257436 - 29257380
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||||||| || |||||| ||||||||    
T  29257436 ttagagtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaatt 29257380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 8049269 - 8049308
Alignment:
Q  133 gggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  8049269 gggggaatgttttgagggaatataatgttttgagggaatt 8049308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 40046795 - 40046858
Alignment:
Q  109 aatacctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||| | ||||||| |||||||||  |||| |||||||||||| ||||||||||||||||||    
T  40046795 aataccctaagagtgtgtttggatggatgaatgttttgagggaatgtaatgttttgagggaatt 40046858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 14991692 - 14991746
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||| ||| ||||||||||||| ||||    
T  14991692 agagtgtgtttggatgggggaatgttttgaggtaatgtaatgttttgaggcaatt 14991746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 515621 - 515564
Alignment:
Q  112 acctttagagtgtatttggatgggggaatattttgagggaatataatgttttgaggga 169  Q
    ||||||||||||| ||||||||| ||||| |||||| ||||| ||||||||| |||||    
T  515621 acctttagagtgtgtttggatggaggaatgttttgaaggaatgtaatgttttaaggga 515564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 3853773 - 3853721
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||| |||||||||||| ||| |||||||| |||||||||    
T  3853773 agtgtgtttggatggggaaatattttgaggtaatgtaatgtttggagggaatt 3853721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 3858231 - 3858179
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||| |||||||||||| ||| |||||||| |||||||||    
T  3858231 agtgtgtttggatggggaaatattttgaggtaatgtaatgtttggagggaatt 3858179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 13404976 - 13404932
Alignment:
Q  128 tggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||    
T  13404976 tggataggggaatgttttgagggaatgtaatgttttgagggaatt 13404932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 29482888 - 29482836
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||||||| |||||||||||  || |||||||||||||||    
T  29482888 agtgtgtttggatgggggaatgttttgagggaacgtattgttttgagggaatt 29482836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 32626117 - 32626069
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgag 166  Q
    |||||||  |||||||||||||| |||||||||||| ||||||||||||    
T  32626117 agagtgtgcttggatgggggaatcttttgagggaatgtaatgttttgag 32626069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 23011734 - 23011788
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||| ||| |||| |||||||||||| ||||||| ||||||||||    
T  23011734 agagtgtgtttggacgggagaatgttttgagggaatgtaatgttatgagggaatt 23011788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 36103101 - 36103155
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||| ||||| |||||||||||| ||||||||| ||| ||||    
T  36103101 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttaaggaaatt 36103155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 27322732 - 27322687
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgtttt 163  Q
    ||||||| |||||||||| |||| |||||||||||| |||||||||    
T  27322732 agagtgtgtttggatgggagaatgttttgagggaatgtaatgtttt 27322687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 29611386 - 29611423
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  29611386 ttagagtgtgtttggatgggggaatgttttgagggaat 29611423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 34008797 - 34008834
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  34008797 ttagagtgtgtttggatgggggaatgttttgagggaat 34008834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 14799979 - 14800014
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||| ||||||||||||||| ||||||||||||    
T  14799979 agagtgtgtttggatgggggaatgttttgagggaat 14800014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 46672878 - 46672821
Alignment:
Q  115 tttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  46672878 tttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 46672821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 5415783 - 5415837
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||    
T  5415783 agagtgtgtttggataggggaatattttgagggaatgtaatgttttgagggaatt 5415837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 49457343 - 49457397
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  49457343 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 49457397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 37321547 - 37321604
Alignment:
Q  115 tttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||||||||||||||||||||||||||| ||  ||||||||||||| ||||    
T  37321547 tttagagtgtatttggatgggggaatattttgaggaaaagtaatgttttgaggaaatt 37321604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 36398063 - 36398007
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||||||| || |||||||||||||||    
T  36398063 ttagagtgtgtttggatgggggaatgttttgagggaatgtattgttttgagggaatt 36398007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 44692820 - 44692876
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||||||  ||||||||||||||||||    
T  44692820 ttagagtgtgtttggatgggggaatgttttgagggaaagtaatgttttgagggaatt 44692876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 47767430 - 47767486
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||    
T  47767430 ttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaatt 47767486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 5415942 - 5415888
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||||||||||||||||||||||||  ||||||||||| ||||||    
T  5415942 agagtgtgtttggatgggggaatattttgagggaaagtaatgttttgatggaatt 5415888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 9129503 - 9129449
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||    
T  9129503 agagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaatt 9129449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 9137610 - 9137556
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||    
T  9137610 agagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaatt 9137556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 27252053 - 27251999
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||||||||| || |||||||||||| ||||||||||||||||||    
T  27252053 agagtgtgtttggatggggggatgttttgagggaatgtaatgttttgagggaatt 27251999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 42006025 - 42005971
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||    
T  42006025 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaatt 42005971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 44436258 - 44436312
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||||||||| ||||    
T  44436258 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggaaatt 44436312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 44692981 - 44692927
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  44692981 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 44692927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 30767102 - 30767158
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||||||||||||| ||| |||||||||||| ||||||| ||| ||||||    
T  30767102 ttagagtgtatttggatggggtaatgttttgagggaatctaatgttatgaaggaatt 30767158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 37054392 - 37054448
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||| ||||||| ||||||||||| ||||||    
T  37054392 ttagagtgtgtttggatgggggaatgttttaagggaatgtaatgttttgaaggaatt 37054448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 46429557 - 46429501
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||| ||||||||||||||| ||| ||||||||||| ||||||    
T  46429557 ttagagtgtgtttggatgagggaatattttgaggtaatgtaatgttttgaaggaatt 46429501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 47284387 - 47284331
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||| | ||||||||||||| ||| ||||||||||||||||||    
T  47284387 ttagagtgtgtttggatgagagaatattttgaggtaatgtaatgttttgagggaatt 47284331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 671691 - 671637
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||| ||||||| |||||||||||| || |||||||||||||||    
T  671691 agagtgtttttggataggggaatgttttgagggaatgtattgttttgagggaatt 671637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 9129344 - 9129398
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||||||| || |||||||||||||| ||||||||||| ||||||    
T  9129344 agagtgtgtttggatgggagactattttgagggaatgtaatgttttgatggaatt 9129398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 9137451 - 9137505
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||||||| || |||||||||||||| ||||||||||| ||||||    
T  9137451 agagtgtgtttggatgggagactattttgagggaatgtaatgttttgatggaatt 9137505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 21307596 - 21307550
Alignment:
Q  126 tttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  21307596 tttggatgggggaatgttttgcgggaatgtaatgttttgagggaatt 21307550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 35279966 - 35279920
Alignment:
Q  126 tttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||||||| |||||||||||| |||||||||||| |||||    
T  35279966 tttggatgggggaatgttttgagggaatgtaatgttttgagtgaatt 35279920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 46001364 - 46001418
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||| |||||||||||||| ||| |||||||| |||||||||    
T  46001364 agagtgtgtttggatggcggaatattttgaggtaatgtaatgtttcgagggaatt 46001418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 28092212 - 28092268
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| | ||||||||||||||| |||||||| ||| | ||||||||||||||||    
T  28092212 ttagagtatgtttggatgggggaatgttttgaggaaatgtgatgttttgagggaatt 28092268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 42130694 - 42130746
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||| ||||||||||||||||||  || ||||||||||||||||||    
T  42130694 agtgtgtttgggtgggggaatattttgaggtgatgtaatgttttgagggaatt 42130746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 53470503 - 53470447
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||| || ||| |||||||||||| || |||||||||||||||    
T  53470503 ttagagtgtgtttggatgaggaaatgttttgagggaatctattgttttgagggaatt 53470447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 2732636 - 2732683
Alignment:
Q  115 tttagagtgtatttggatgggggaatattttgagggaatataatgttt 162  Q
    |||||||||| ||||||||||| ||| |||||||| ||||||||||||    
T  2732636 tttagagtgtgtttggatggggaaatgttttgaggtaatataatgttt 2732683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 7302346 - 7302400
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||||| |||||| ||||||| |||| ||||||||||| ||||||    
T  7302346 agagtgtgtttggatgagggaatgttttgagagaatgtaatgttttgaaggaatt 7302400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 31070422 - 31070460
Alignment:
Q  134 ggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  31070422 ggggaatgttttgagggaatgtaatgttttgagggaatt 31070460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 34088571 - 34088625
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||| | ||| |||||||||||| || |||||||||||||||    
T  34088571 agagtgtgtttggatggagaaatgttttgagggaatgtattgttttgagggaatt 34088625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 39215995 - 39215949
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgag 166  Q
    ||||| |||||||| | ||||||||||||| ||||||||||||||||    
T  39215995 agtgtgtttggatgagagaatattttgaggtaatataatgttttgag 39215949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 44288523 - 44288477
Alignment:
Q  126 tttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||| |||||||| ||||||||||||||| ||||||    
T  44288523 tttggatggaggaatgttttgaggtaatataatgttttgatggaatt 44288477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 46429412 - 46429449
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  46429412 ttagagtgtgtttggatgggggaatgttttgagggaat 46429449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 47284259 - 47284222
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  47284259 ttagagtgtgtttggatgagggaatattttgagggaat 47284222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 31070567 - 31070511
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| | |||| || || ||||||||||||| ||| ||||||||||||||||||    
T  31070567 ttagagtatgtttgaattggagaatattttgaggtaatgtaatgttttgagggaatt 31070511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 48947603 - 48947659
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||||  |||| |||||||||||| || ||||||||| |||||    
T  48947603 ttagagtgtgtttggatggaagaatgttttgagggaatgtattgttttgagagaatt 48947659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 19475823 - 19475870
Alignment:
Q  125 atttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||| ||||| |||||||||||| ||||||| ||||| ||||    
T  19475823 atttggatggaggaatgttttgagggaatgtaatgttatgaggtaatt 19475870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 7e-17; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 2057556 - 2057500
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  2057556 ttagagtgtgtttggatgggggaatattttgagggaaagtaatgttttgagggaatt 2057500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 40110737 - 40110791
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  40110737 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 40110791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 43955517 - 43955571
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  43955517 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 43955571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 43955677 - 43955619
Alignment:
Q  114 ctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  43955677 ctttatagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 43955619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 6498826 - 6498770
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  6498826 ttagagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 6498770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 26162198 - 26162142
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  26162198 ttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaatt 26162142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 28539229 - 28539173
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||||||| || |||||||||||||||    
T  28539229 ttagagtgtgtttggatgggggaatgttttgagggaatgtattgttttgagggaatt 28539173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 18789306 - 18789251
Alignment:
Q  117 tagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  18789306 tagagtgtgtttggatggaggaatattttgagagaatataatgttatgagggaatt 18789251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 34399010 - 34398959
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagg 167  Q
    ||||||||| ||||||||||||||| |||||||||||| |||||||||||||    
T  34399010 ttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagg 34398959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 2057395 - 2057449
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| ||||||| |||| ||||||||||||||||||    
T  2057395 agagtgtgtttggatgggggaatgttttgagcgaatgtaatgttttgagggaatt 2057449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 31632722 - 31632776
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  31632722 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaatt 31632776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 35455800 - 35455858
Alignment:
Q  114 ctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||| ||||||||||||||| |||||||||||| || |||||| ||||||||    
T  35455800 ctttagagtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaatt 35455858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 29065812 - 29065873
Alignment:
Q  111 tacctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||| ||||||| |||||||||  |||| |||||||||||| ||||||||||||||||||    
T  29065812 taccttaagagtgtgtttggatggatgaatgttttgagggaatgtaatgttttgagggaatt 29065873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 5644838 - 5644782
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||  |||||||| ||| ||||||||||||||||||    
T  5644838 ttagagtgtgtttggatgggggaacgttttgaggtaatgtaatgttttgagggaatt 5644782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 39342706 - 39342647
Alignment:
Q  113 cctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||| ||||||| ||||||||||||||| |||||||||||| || |||||| ||||||||    
T  39342706 ccttaagagtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaatt 39342647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 5644677 - 5644731
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||| |||| ||||| |||||||||||| ||||||||||||||||||    
T  5644677 agagtgtgtttgaatggaggaatgttttgagggaatgtaatgttttgagggaatt 5644731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 14603321 - 14603267
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| || |||||| ||||||||    
T  14603321 agagtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaatt 14603267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 35777014 - 35776960
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||||| |||||| |||||||||||| ||||||| ||||||||||    
T  35777014 agagtgtgtttggatgagggaatgttttgagggaatgtaatgttatgagggaatt 35776960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 40110897 - 40110843
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||| ||| ||| |||||||| ||||||||||||||||||    
T  40110897 agagtgtgtttggatggggaaatgtttcgagggaatgtaatgttttgagggaatt 40110843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 9784989 - 9784936
Alignment:
Q  119 gagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||| ||||||||| ||||| |||||||||||| || |||||||||||||||    
T  9784989 gagtgtgtttggatggaggaatgttttgagggaatgtattgttttgagggaatt 9784936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 23548673 - 23548616
Alignment:
Q  115 tttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||| ||||||||| ||||| |||||||||||| || |||||||||| ||||    
T  23548673 tttagagtgtgtttggatggaggaatgttttgagggaatgtattgttttgaggaaatt 23548616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 29065981 - 29065924
Alignment:
Q  115 tttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||| ||||||||| ||||| |||| ||| ||| ||||||||||||||||||    
T  29065981 tttagagtgtgtttggatggaggaatgttttaaggtaatgtaatgttttgagggaatt 29065924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 23455308 - 23455252
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||| |||||||| |||||| |||||||||||| || |||||||||||||||    
T  23455308 ttagaatgtgtttggatgagggaatgttttgagggaatgtattgttttgagggaatt 23455252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 29195709 - 29195756
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttga 165  Q
    ||||||| ||||||||| |||||||||||||| ||| |||||||||||    
T  29195709 agagtgtgtttggatggaggaatattttgaggtaatgtaatgttttga 29195756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 21635885 - 21635935
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgaggg 168  Q
    |||||||  ||||||||| ||||||||||||| ||| ||||||||||||||    
T  21635885 agagtgtgcttggatgggagaatattttgaggtaatgtaatgttttgaggg 21635935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 21636036 - 21635990
Alignment:
Q  126 tttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||| ||| |||||||||||| ||||||||||| ||||||    
T  21636036 tttggatggggaaatgttttgagggaatgtaatgttttgaaggaatt 21635990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 25189285 - 25189231
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||||| |||||| |||||||| |||  |||||||||||||||||    
T  25189285 agagtgtgtttggatgtgggaatgttttgaggtaatgcaatgttttgagggaatt 25189231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 40853980 - 40854022
Alignment:
Q  111 tacctttagagtgtatttggatgggggaatattttgagggaat 153  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||    
T  40853980 tacccttagagtgtgtttggatgggggaatgttttgagggaat 40854022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 31913227 - 31913271
Alignment:
Q  109 aatacctttagagtgtatttggatgggggaatattttgagggaat 153  Q
    |||| ||| ||||||| ||||||||||||||| ||||||||||||    
T  31913227 aataacttaagagtgtgtttggatgggggaatgttttgagggaat 31913271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 34388426 - 34388370
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||| |||  ||||| |||||||||||| |||| |||||||||||||    
T  34388426 ttagagtgtgtttgaatgatggaatgttttgagggaatgtaatattttgagggaatt 34388370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 7e-17; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 9285645 - 9285701
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  9285645 ttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 9285701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 34245055 - 34244999
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  34245055 ttagagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 34244999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 6919866 - 6919812
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||  ||||||||||||||||||    
T  6919866 agagtgtgtttggatgggggaatgttttgagggaaagtaatgttttgagggaatt 6919812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 8574687 - 8574749
Alignment:
Q  110 atacctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||| ||||||||||| ||| ||||||| |||| ||||||||||||||||||    
T  8574687 atacccttagagtgtgtttggatggggaaatgttttgagtgaatgtaatgttttgagggaatt 8574749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 9763171 - 9763117
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||| |||||||||||||| ||| ||||||||||||||||||    
T  9763171 agagtgtgtttggatggaggaatattttgaggtaatgtaatgttttgagggaatt 9763117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 29889509 - 29889453
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||| ||||| |||||| ||||| ||||||||||||||||||    
T  29889509 ttagagtgtgtttggatggaggaatgttttgatggaatgtaatgttttgagggaatt 29889453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 8574824 - 8574770
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||| ||| ||||||| |||| ||||||||||||||||||    
T  8574824 agagtgtgtttggatggggaaatgttttgagtgaatgtaatgttttgagggaatt 8574770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 13487272 - 13487329
Alignment:
Q  115 tttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||| ||| ||||||||||| |||||||||||| || |||| ||||||||||    
T  13487272 tttagagtgtgtttagatgggggaatgttttgagggaatgtagtgttatgagggaatt 13487329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 33733423 - 33733472
Alignment:
Q  109 aatacctttagagtgtatttggatgggggaatattttgagggaatataat 158  Q
    |||| ||||||||||| ||||||||||||||| |||||||||||| ||||    
T  33733423 aatatctttagagtgtgtttggatgggggaatgttttgagggaatgtaat 33733472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 6919710 - 6919762
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||| |||||  ||||||||||| ||||||||||||||||||    
T  6919710 agtgtgtttggatggaggaatggtttgagggaatgtaatgttttgagggaatt 6919762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 9763014 - 9763066
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| |||||| |||| ||| |||||||||||| ||||||||||||||||||    
T  9763014 agtgtgtttggaaggggaaatgttttgagggaatgtaatgttttgagggaatt 9763066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 28918165 - 28918219
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||| ||||| |||||||||||| ||||||||| ||| ||||    
T  28918165 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttaaggaaatt 28918219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 15299586 - 15299530
Alignment:
Q  115 tttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||| ||| ||||||||||| ||| |||||||||||| ||||||||||| ||||||    
T  15299586 tttagaatgtgtttggatgggg-aatgttttgagggaatgtaatgttttgaaggaatt 15299530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 776078 - 776134
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||| ||||| | ||| |||||||||||| ||||||||||||| ||||    
T  776078 ttagagtgtgtttagatggagaaatgttttgagggaatgtaatgttttgaggaaatt 776134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 7e-17; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 4038236 - 4038180
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  4038236 ttagagtgtgtttggatgggggaatattttgagggaaagtaatgttttgagggaatt 4038180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 15034820 - 15034764
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  15034820 ttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 15034764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 28745799 - 28745851
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  28745799 agtgtatttggatgggggaatattttgagggaatgtaatggtttgagggaatt 28745851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 23536067 - 23536121
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  23536067 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 23536121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 4038069 - 4038129
Alignment:
Q  112 acctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||    
T  4038069 accttaagagtgtgtttgggtgggggaatgttttgagggaatgtaatgttttgagggaatt 4038129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 24273295 - 24273239
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  24273295 ttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaatt 24273239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 30190297 - 30190241
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||||| ||||    
T  30190297 ttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaggtaatt 30190241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 34756425 - 34756481
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||| || ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  34756425 ttagagagtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaatt 34756481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 34756584 - 34756532
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||||||||||||    
T  34756584 agtgtgtttggatggggaaatattttgaggtaatataatgttttgagggaatt 34756532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 40264187 - 40264135
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||||||||||||    
T  40264187 agtgtgtttggatgggggaatattttgaggtaatgtaatgttttgagggaatt 40264135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 8224768 - 8224823
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaattg 173  Q
    ||||||| |||||||| |||||| |||||||||||| |||||||||||||||||||    
T  8224768 agagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaattg 8224823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 15034659 - 15034713
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  15034659 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 15034713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 26501152 - 26501098
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  26501152 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaatt 26501098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 47165293 - 47165231
Alignment:
Q  110 atacctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||||||| ||||||||| | ||| |||||||| ||| ||||||||||||||||||    
T  47165293 atacctttagagtgtgtttggatggagaaatgttttgaggaaatgtaatgttttgagggaatt 47165231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 6470762 - 6470705
Alignment:
Q  115 tttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||| ||||||||| ||||| ||||||| |||| ||||||||||||||||||    
T  6470762 tttagagtgtgtttggatggcggaatgttttgagagaatgtaatgttttgagggaatt 6470705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 32573072 - 32573027
Alignment:
Q  127 ttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  32573072 ttggatgggggaatattttgaggtaatgtaatgttttgagggaatt 32573027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 44410309 - 44410365
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||||||||||||| |||| |||||||||||| ||||||||| || |||||    
T  44410309 ttagagtgtatttggatgggagaatgttttgagggaatgtaatgttttaagcgaatt 44410365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 45565392 - 45565448
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||| |||| ||||||||||||||| ||||||| |||| ||||||||||||||||||    
T  45565392 ttagggtgtgtttggatgggggaatgttttgagagaatgtaatgttttgagggaatt 45565448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 50005236 - 50005184
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||| |||||||||||||| ||| ||||||||||||||||||    
T  50005236 agtgtgtttggatggaggaatattttgaggtaatgtaatgttttgagggaatt 50005184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 27804273 - 27804319
Alignment:
Q  126 tttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||||||||| |||||||||||| |||| |||||||||||||    
T  27804273 tttggatgggggaatgttttgagggaatgtaatattttgagggaatt 27804319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 27935644 - 27935590
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||| | |||||||||||||||| ||||||||||||| ||||    
T  27935644 agagtgtgtttggatggagaaatattttgagggaatgtaatgttttgaggaaatt 27935590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 38277415 - 38277469
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||||| | ||||||||||||||||| ||||||||||| ||||||    
T  38277415 agagtgtgtttggatgagagaatattttgagggaatgtaatgttttgaaggaatt 38277469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 44410470 - 44410416
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||| |||||||||||||||| ||| ||| ||||||||||||||    
T  44410470 agagtgtgtttggattggggaatattttgaggtaatgtaaagttttgagggaatt 44410416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 25889156 - 25889211
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||||| ||||| ||||||||||||||| ||| ||||||||||| ||||||    
T  25889156 ttagagtgtattgggatgagggaatattttgaggtaat-taatgttttgaaggaatt 25889211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 38277571 - 38277520
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  38277571 agtgtgtttggatgggg-aatattttgaggtaatgtaatgttttgagggaatt 38277520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 43623051 - 43623003
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgag 166  Q
    ||||||| ||||||||||||||| |||||| ||||| ||||||||||||    
T  43623051 agagtgtgtttggatgggggaatgttttgatggaatgtaatgttttgag 43623003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 37037019 - 37036968
Alignment:
Q  121 gtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||| |||||||| |||||| ||||||| |||| ||||||||||||||||||    
T  37037019 gtgtgtttggatgagggaatgttttgagtgaatgtaatgttttgagggaatt 37036968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 29446750 - 29446804
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||| | |||||||| |||||| ||||| ||||||||||||||||||    
T  29446750 agagtgtgtttgaacgggggaatgttttgaaggaatgtaatgttttgagggaatt 29446804  T

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Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 32288006 - 32287952
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||| ||||  |||||||||||| ||||||||||||| ||||    
T  32288006 agagtgtgtttggatggaggaaagttttgagggaatgtaatgttttgaggaaatt 32287952  T

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Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 37447967 - 37447921
Alignment:
Q  126 tttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||| |||||||| ||||||||||| ||||||    
T  37447967 tttggataggggaatatttggagggaatgtaatgttttgaaggaatt 37447921  T

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Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 50005079 - 50005133
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||  ||||||||||||| |||| |||||||||||| |||||    
T  50005079 agagtgtgtttggatgacggaatattttgagagaatgtaatgttttgagcgaatt 50005133  T

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Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 32572938 - 32572975
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  32572938 ttagagtgtgtttggatgggggaatgttttgagggaat 32572975  T

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Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 34007356 - 34007393
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  34007356 ttagagtgtgtttggatggggaaatattttgagggaat 34007393  T

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Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 37448465 - 37448420
Alignment:
Q  127 ttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| |||||| ||||||| |||| ||||||||||||||||||    
T  37448465 ttggatgagggaatgttttgagagaatgtaatgttttgagggaatt 37448420  T

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Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 44570687 - 44570732
Alignment:
Q  127 ttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| |||| |||||||||||| ||||||||||| ||||||    
T  44570687 ttggatgggagaatgttttgagggaatgtaatgttttgaaggaatt 44570732  T

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Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 5474417 - 5474457
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataat 158  Q
    ||||||| ||||||||||||||| |||||||||||| ||||    
T  5474417 agagtgtgtttggatgggggaatgttttgagggaatttaat 5474457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 28632656 - 28632604
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| |||||||| |||||| ||| |||||||| |||||||||||| |||||    
T  28632656 agtgtgtttggatgagggaatgtttggagggaatgtaatgttttgagagaatt 28632604  T

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Target: chr1; HSP #38
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 15245460 - 15245495
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||| ||||||||||||||| ||||||||||||    
T  15245460 agagtgtgtttggatgggggaatgttttgagggaat 15245495  T

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Target: chr1; HSP #39
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 31166304 - 31166363
Alignment:
Q  112 acctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaat 171  Q
    ||||| ||||||| |||||||| |||||| |||||||  ||| ||||||||||| |||||    
T  31166304 accttaagagtgtgtttggatgagggaatgttttgagataatgtaatgttttgatggaat 31166363  T

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Target: chr1; HSP #40
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 32652205 - 32652260
Alignment:
Q  117 tagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||||||||||| | ||| |||||||| ||| || |||||||||| ||||    
T  32652205 tagagtgtatttggatggagaaatgttttgaggaaatgtattgttttgaggaaatt 32652260  T

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Target: chr1; HSP #41
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 34007476 - 34007441
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||| ||||||||||| ||||||||||||||||    
T  34007476 agagtgtgtttggatggggaaatattttgagggaat 34007441  T

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Target: scaffold0009 (Bit Score: 40; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 41992 - 42051
Alignment:
Q  113 cctttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||||||| |||| |||| ||||| |||||||||||| ||||||||||||||||||    
T  41992 cctttagagtgtgtttgaatggaggaatgttttgagggaatgtaatgttttgagggaatt 42051  T

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Target: scaffold0009; HSP #2
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 42137 - 42083
Alignment:
Q  118 agagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||| ||||||||||||||  |||||||||||| |||||||||||| |||||    
T  42137 agagtgtgtttggatgggggaacgttttgagggaatgtaatgttttgagagaatt 42083  T

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Target: scaffold0400 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 4570 - 4517
Alignment:
Q  119 gagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||| |||||||| |||||| |||||||||||||||||||||||||| ||||    
T  4570 gagtgtgtttggatgagggaatgttttgagggaatataatgttttgaggaaatt 4517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 5214 - 5161
Alignment:
Q  119 gagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||| |||||||| |||||| |||||||||||||||||||||||||| ||||    
T  5214 gagtgtgtttggatgagggaatgttttgagggaatataatgttttgaggaaatt 5161  T

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Target: scaffold0048 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 82945 - 82997
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| |||||||||| |||| |||||||||||| ||||||||||||||||||    
T  82945 agtgtgtttggatgggtgaatgttttgagggaatgtaatgttttgagggaatt 82997  T

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Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 19200 - 19247
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagg 167  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||||    
T  19200 agtgtgtttggatgggggagtattttgagggaatgtaatgttttgagg 19247  T

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Target: scaffold0044 (Bit Score: 35; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 56425 - 56379
Alignment:
Q  126 tttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||||    
T  56425 tttggatgagggaatattttgagggaaagtaatgttttgagggaatt 56379  T

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Target: scaffold0318 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 2865 - 2921
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||||||| ||| ||||||||||| ||| ||| |||| ||||||||||||||||||    
T  2865 ttagagtgtgtttagatgggggaatgtttcgagagaatgtaatgttttgagggaatt 2921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 153
Target Start/End: Original strand, 109045 - 109084
Alignment:
Q  114 ctttagagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  109045 ctttagagtgtgtttggatgggggaatgttttgagggaat 109084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 17642 - 17605
Alignment:
Q  116 ttagagtgtatttggatgggggaatattttgagggaat 153  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  17642 ttagagtgtgtttggatgggggaatgttttgagggaat 17605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 7153 - 7205
Alignment:
Q  120 agtgtatttggatgggggaatattttgagggaatataatgttttgagggaatt 172  Q
    ||||| ||||||||| ||||| |||||||||||| || |||||| ||||||||    
T  7153 agtgtgtttggatggaggaatgttttgagggaatgtattgttttaagggaatt 7205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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