View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9316-LTR4-TNT-insertion-5 (Length: 310)
Name: F9316-LTR4-TNT-insertion-5
Description: F9316-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9316-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 18140080 - 18140373
Alignment:
| Q |
9 |
aggactcctaacacttggtagattctgctacagaacacggttaacctaattgagaccaaaagttgctcacattgacccctcaatcatatgcaaccctatc |
108 |
Q |
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| T |
18140080 |
aggactcctaacacttggtagattctgctacagaacacggttaacctaattgagaccaaaagttgctcacattgacccctcaatcatatgcaaccctatc |
18140179 |
T |
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| Q |
109 |
tagatttataagatgagtaaggtggtgcactctgttgcaccgaacttctgattgaagacgtatccaagtgtttgacatgtgtcgtatttgtcaccgacac |
208 |
Q |
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| T |
18140180 |
tagatttataagatgagtaaggtggtgcactctgttgcaccgaacttctgattgaagacgtatccaagtgtttgacatgtgtcgtatttgtcaccgacac |
18140279 |
T |
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| Q |
209 |
ttgtgactacattgaattatataannnnnnnnnnnaaattttatcgatctcgacgtgtcaatgaaatgtttgcttcacaatattttctaattgg |
302 |
Q |
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| T |
18140280 |
ttgtgactacattgaattatataatttttttttttaaattttatcgatctcgacgtgtcaatgaaatgtttgcttcacaatattttccaattgg |
18140373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 28 - 206
Target Start/End: Original strand, 18106463 - 18106649
Alignment:
| Q |
28 |
agattctgctacagaacacggttaacctaattgagaccaaaagtt-gctcacattgacccctcaatcatatgca-accctatctagatttataagatgag |
125 |
Q |
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| T |
18106463 |
agattctgttacagaatatgattaacctaatcaaggccaacagtttgttgacattgatccctcaatcatatgcctaccctatctagattcacaagatgag |
18106562 |
T |
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| Q |
126 |
taaggtggtgcactctgttgcaccg------aacttctgattgaagacgtatccaagtgtttgacatgtgtcgtatttgtcaccgac |
206 |
Q |
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| T |
18106563 |
taaagtggtgtacactgttgcaccgcacagacacttctgattgaagacgtgtccagatgtatgacatgtgtcgtgtctgtcaccgac |
18106649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 43585960 - 43586036
Alignment:
| Q |
152 |
acttctgattgaagacgtatccaagtgtttgacatgtgtcgtatttgtcaccgacacttgtgactacattgaattat |
228 |
Q |
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| T |
43585960 |
acttctgattgaaggtgtgtccatgtgtctgacacgtatcgtgtccgacaccgacacttgtgattacattgaattat |
43586036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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