View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9317-LTR4-TNT-insertion-1 (Length: 171)
Name: F9317-LTR4-TNT-insertion-1
Description: F9317-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9317-LTR4-TNT-insertion-1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 3e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 3e-80
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 22269462 - 22269612
Alignment:
| Q |
9 |
aacaatcagatctcacacaaatttccaattaaacataccatcagtcgaatcacttatcattcaagcattacaacaaataccttgagaacaaaccccggtg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22269462 |
aacaatcagatctcacacaaatttccaattaaacataccatcagtcgaatcacttatcattcaagcattacaacaaataccttgagaacaaaccccggtg |
22269561 |
T |
|
| Q |
109 |
tgtcaataatggtaagatttggacagtgtgcgtattcagctttgagcacaa |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22269562 |
tgtcaataatggtaagatttggacagtgtgcgtattcagctttgagcacaa |
22269612 |
T |
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