View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9317-LTR4-TNT-insertion-10 (Length: 580)
Name: F9317-LTR4-TNT-insertion-10
Description: F9317-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9317-LTR4-TNT-insertion-10 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 230 - 571
Target Start/End: Original strand, 11850140 - 11850481
Alignment:
| Q |
230 |
actacgtaccttctagtgtttcagccacatttggaaccttgtcacattgattgctaccaatacatatatatagtctatcagcttgttcaagaaccttata |
329 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11850140 |
actacgtaccttctagtgtttgagccacatttggaaccttgtcacattgattgctacgaatacatatatatagtctatcagcttgttcaagaaccttata |
11850239 |
T |
|
| Q |
330 |
taagcaattctccaaggtctccaaagtagtattggccctaataatccccaaaaacctgtgaaatagcctatccccaagcacatgtaaaatccttcatgga |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11850240 |
taagcaattctccaaggtctccaaagtagtattggccctaataatccccaaaaacctgtgaaatagcctatccccaagcacatgtaaaatccttcatgga |
11850339 |
T |
|
| Q |
430 |
aaactgaattgccatcttcaccatgaatttctgacccttgaggatttactgttgtcgtgtcttcgggacannnnnnnncaagtggttcaccacaaagatc |
529 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11850340 |
aaactgaattgccatcttcaccatgaatttctgacccttgaggatttactgttgtcgtgtcttcgggacatttttattcaagtggttcaccacaaagatc |
11850439 |
T |
|
| Q |
530 |
aagatttccttcaaaacctgagggagctaaggtttgcaattg |
571 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11850440 |
aagatttccttcaaaacctgagggatctaaggtttgcaattg |
11850481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 235 - 571
Target Start/End: Complemental strand, 11965399 - 11965064
Alignment:
| Q |
235 |
gtaccttctagtgtttcagccacatttggaaccttgtcacattgattgctaccaatacatatatatagtctatcagcttgttcaagaaccttatataagc |
334 |
Q |
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|||||||||||| ||| ||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11965399 |
gtaccttctagtttttgagccacacttggaaccttgccacattgactgccaccaatacatatatatagtctatcaatttgttcaagaaccttatataagc |
11965300 |
T |
|
| Q |
335 |
aattctccaaggtctccaaagtagtattggccctaataatccccaaaaacctgtgaaatagcctatccccaagcacatgtaaaatccttcatggaaaact |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
11965299 |
aattctccaaggtctccaaagtagtattggccctaataatccccaaaaacctgtgaaatagcttagccccaagcacatgtaaaatccttcatggaaaact |
11965200 |
T |
|
| Q |
435 |
gaattgccatcttcaccatgaatttctgacccttgaggatttactgttgtcgtgtcttcgggacannnnnnnncaagtggttcaccacaaagatcaagat |
534 |
Q |
| |
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|||||| |||||||||||| ||||||||||||||||||||||||||| |||| ||||| |||||| |||||||||| |||||||||||||||| |
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| T |
11965199 |
gaattgtcatcttcaccat-aatttctgacccttgaggatttactgtcgtcgcgtctttgggacattttttttcaagtggttccccacaaagatcaagat |
11965101 |
T |
|
| Q |
535 |
ttccttcaaaacctgagggagctaaggtttgcaattg |
571 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
11965100 |
ttccttcaaaacctgagggatctaaggtttgcaattg |
11965064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 230 - 571
Target Start/End: Complemental strand, 11931118 - 11930777
Alignment:
| Q |
230 |
actacgtaccttctagtgtttcagccacatttggaaccttgtcacattgattgctaccaatacatatatatagtctatcagcttgttcaagaaccttata |
329 |
Q |
| |
|
|||| ||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11931118 |
actatgtaccttctggtgtttgagccacatttggaaccttgtcacattgactgctaccaatacatatatatagtctatcaacttgttcaagaaccttata |
11931019 |
T |
|
| Q |
330 |
taagcaattctccaaggtctccaaagtagtattggccctaataatccccaaaaacctgtgaaatagcctatccccaagcacatgtaaaatccttcatgga |
429 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | | |||||| |||||||| |||||||||| | |
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| T |
11931018 |
taagcaattctccaaggtctccaaagtagtatttgccccaataatccccaaaaacctgtgaaatagcttgttcccaagaacatgtaatatccttcatgaa |
11930919 |
T |
|
| Q |
430 |
aaactgaattgccatcttcaccatgaatttctgacccttgaggatttactgttgtcgtgtcttcgggacannnnnnnncaagtggttcaccacaaagatc |
529 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||| |||| |||||| |||| |||||||||||||||||||||| |
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| T |
11930918 |
aaactgaattgtcatcttcaccatgaatttctgaccctcgaggatttactggtgtcacgtcttcaagacattttttttcaagtggttcaccacaaagatc |
11930819 |
T |
|
| Q |
530 |
aagatttccttcaaaacctgagggagctaaggtttgcaattg |
571 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||| |
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| T |
11930818 |
aagatttccttcaaaactggagggatctaaggtttgcaattg |
11930777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 11849767 - 11849893
Alignment:
| Q |
9 |
attttcccttccagtccagcaactctcaatgcttgctactaggatgctgtaaactgcaaaatttacattgtgcaatacaaacattaatttaatggtgatc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11849767 |
attttcccttccagtccagcaactctcaatgcttgctactaggatgatgtaaactgcaaaatttacattgtgcggtacaaacattaatttaatggtgatc |
11849866 |
T |
|
| Q |
109 |
aagaaacaaagttaaaaatattcacaa |
135 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
11849867 |
aagaaacaaagttaaaaatattcacaa |
11849893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 11931553 - 11931449
Alignment:
| Q |
12 |
ttcccttccagtccagcaactctcaatgcttgctactaggatgctgtaaactgcaaaatttacattgtgcaatacaaacattaatttaatggtgatcaag |
111 |
Q |
| |
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|||||||||| ||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11931553 |
ttcccttccattcctgcaactc--aatgcttgctattaggatgctgtaaactgcaaaatttacattgtgcaatacaaacattaatttaatggtgatcaag |
11931456 |
T |
|
| Q |
112 |
aaacaaa |
118 |
Q |
| |
|
||||||| |
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| T |
11931455 |
aaacaaa |
11931449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 120 - 226
Target Start/End: Complemental strand, 11931410 - 11931303
Alignment:
| Q |
120 |
ttaaaaatattcacaaccaaataattaatggatttaatttgtgtaagctgacaatgtaaaacttttttatacatgcatctaattaaatcatgtca-gtag |
218 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||| |||||| ||||||||||||||||||||||||| ||| |
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|
| T |
11931410 |
ttaaaaatatttccaaccaaataattaatacatttaatttgtatatgctgacaatgtaaaacatttttacacatgcatctaattaaatcatgtcatatag |
11931311 |
T |
|
| Q |
219 |
atatttta |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
11931310 |
atatttta |
11931303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 11849893 - 11849963
Alignment:
| Q |
164 |
aagctgacaatgtaaaacttttttatacatgcatctaattaaatcatgtca-gtagatattttaagaacta |
233 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
11849893 |
aagctaacaatgtaaaacttttttacgcatgcatctaattaaatcatgtcatgtagatattttaagaacta |
11849963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 11965815 - 11965735
Alignment:
| Q |
9 |
attttcccttccagtccagcaactctcaatgcttgctactaggatgctgtaaactgcaaaatttacattgtgcaatacaaacatta |
94 |
Q |
| |
|
||||| ||||| || ||||||||||||||| |||||||||||| |||||| |||||||||||||| | ||||||||||||||| |
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|
| T |
11965815 |
atttttccttcgaggccagcaactctcaat---tgctactaggattctgtaacctgcaaaatttaca--gcgcaatacaaacatta |
11965735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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