View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9317-LTR4-TNT-insertion-11 (Length: 302)
Name: F9317-LTR4-TNT-insertion-11
Description: F9317-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9317-LTR4-TNT-insertion-11 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 293
Target Start/End: Complemental strand, 1777876 - 1777591
Alignment:
| Q |
8 |
atagcctctttgttcttctcctaattggtcaaagacctagcaaatatataaagtgctacaagtctatctaatagctcattcctaattatagagatataat |
107 |
Q |
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| T |
1777876 |
atagcctctttgttcttctcctaattggtcaaagacctagcaaatatataaagtgctacaagtctatctaatagctcattcctaattatagagatataat |
1777777 |
T |
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| Q |
108 |
atattattaatatgtttaaccgggaaagacacgttgtgctgattcttctcttctttattctttcatttttcattggtgctaatgggaagcactttgtgct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1777776 |
atattattaatatgtttaaccgggaaagacacgttgtgctgattcttctcttctttattctttcatttttcattggtgctaatgggaagcactttgtgct |
1777677 |
T |
|
| Q |
208 |
tgttcatggagctggccatggtgcatggtgttggtataaggttgcaaccatgttgaaatcagctggtcataatgttaccacaattg |
293 |
Q |
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| T |
1777676 |
tgttcatggagctggccatggtgcatggtgttggtataaggttgcaaccatgttgaaatcagctggtcataatgttaccacaattg |
1777591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 29 - 285
Target Start/End: Complemental strand, 1801900 - 1801643
Alignment:
| Q |
29 |
taattggtcaaagacctagcaaatatataaagt-gctacaagtctatctaatagctcattcctaattatagagatataatatattattaatatgtttaac |
127 |
Q |
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| T |
1801900 |
taattggtcaatgaccaaacacatatataaaggagctaaaggtctatgtattagctcattcctaatcatagagatataatatattatcaacatgtttaaa |
1801801 |
T |
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| Q |
128 |
cgggaaagacacgttgtgctgattcttctcttctttattctttcatttttcattggtgctaatgggaagcactttgtgcttgttcatggagctggccatg |
227 |
Q |
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| T |
1801800 |
caaggaagacacgttgtgttgattcttctcttctttattctttcatttttcattggtgctaatgggaagcactttgtgcttgttcatggagctttccatg |
1801701 |
T |
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| Q |
228 |
gtgcatggtgttggtataaggttgcaaccatgttgaaatcagctggtcataatgttac |
285 |
Q |
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| T |
1801700 |
gtgcatggtgttggtataaggttgcaactatgcttaaattagctggtcataatgttac |
1801643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 69 - 285
Target Start/End: Complemental strand, 1785052 - 1784833
Alignment:
| Q |
69 |
gtctatctaatagctcattcctaattatagagatataatatattattaatatgtttaaccgggaaagacacgt---tgtgctgattcttctcttctttat |
165 |
Q |
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| T |
1785052 |
gtctatctactagctcattcctaatcatagagatataatatattatcaatatgtttaaacggggaagacacgtaattgtgttgattcttctcttcttcat |
1784953 |
T |
|
| Q |
166 |
tctttcatttttcattggtgctaatgggaagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttgcaaccatgttgaaa |
265 |
Q |
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||||||||||| ||| || |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | ||| |
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| T |
1784952 |
tctttcattttctgttgatgttaatggaaagcactttgtgcttgttcatggagctggccatggtgaatggtgttggtataaggttgcaactatgcttaaa |
1784853 |
T |
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| Q |
266 |
tcagctggtcataatgttac |
285 |
Q |
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| T |
1784852 |
tcagctggtcataatgttac |
1784833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 1772696 - 1772633
Alignment:
| Q |
222 |
gccatggtgcatggtgttggtataaggttgcaaccatgttgaaatcagctggtcataatgttac |
285 |
Q |
| |
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|||||||||||||||||||||||||||| | ||| ||| | ||||||||||||||||||||||| |
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| T |
1772696 |
gccatggtgcatggtgttggtataaggtggtaactatgcttaaatcagctggtcataatgttac |
1772633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 1769053 - 1768992
Alignment:
| Q |
194 |
aagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttgcaac |
255 |
Q |
| |
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|||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1769053 |
aagcactttgtgttgattcatggaggcatccatggtgcatggtgttggtataaggttgcaac |
1768992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 152 - 285
Target Start/End: Original strand, 25727482 - 25727615
Alignment:
| Q |
152 |
cttctcttctttattctttcatttttcattggtgctaatgggaagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttg |
251 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |
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| T |
25727482 |
cttctcttctttattctttcatttttcattggtgttaatgggaagcactttgtgcttgttcatggacctttccatggtgcatggtcttggtataaggttg |
25727581 |
T |
|
| Q |
252 |
caaccatgttgaaatcagctggtcataatgttac |
285 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||| |
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| T |
25727582 |
caactatgctgaaatcagctggtcataatgttac |
25727615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 25727423 - 25727477
Alignment:
| Q |
69 |
gtctatctaatagctcattcctaattatagagatataatatattattaatatgtt |
123 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||| || ||||| |
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| T |
25727423 |
gtctatctactagctcattcctaattatagagatataatacattatcaagatgtt |
25727477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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