View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9317-LTR4-TNT-insertion-12 (Length: 112)
Name: F9317-LTR4-TNT-insertion-12
Description: F9317-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9317-LTR4-TNT-insertion-12 |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 22772414 - 22772322
Alignment:
| Q |
10 |
tttgttctactatgctatgtttatcttttgtctatcaatttgaacattctgggctactgtcccatttggtgaacacaattggcatgcttatta |
102 |
Q |
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| T |
22772414 |
tttgttctactatgctatgtttatcttttgtccatcaatttgaacattctgggctactgtcccatttggtgaacacaattggcatgcttatta |
22772322 |
T |
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