View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9317-LTR4-TNT-insertion-2 (Length: 665)
Name: F9317-LTR4-TNT-insertion-2
Description: F9317-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9317-LTR4-TNT-insertion-2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 619; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 9 - 655
Target Start/End: Complemental strand, 2998501 - 2997855
Alignment:
| Q |
9 |
aacaaactatgttttcgtttaggtgcaagcatttagatgtttggaattttatgtttgccactttttctggggggatttcaagaccagatcaaacaagtgc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2998501 |
aacaaactatgttttcgtttaggtgcaagcatttagatgtttggaattttatgtttgccactttttctggggggatttcaagaccagatcaaacaagtgc |
2998402 |
T |
|
| Q |
109 |
attgaaagtgaaatatataaaacattttatttaattgttgctatcactccattttggatccgttttcttcaggtatgcatcttccattcattttgtatcc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2998401 |
attgaaagtgaaatatataaaacattttatttaattgttgctatcactccattttggatccgttttcttcaggtatgcatcttccattcattttgtatcc |
2998302 |
T |
|
| Q |
209 |
atgnnnnnnnntagacatggaaataagaaatgtgatttttgtaacacaaaatttgaccttcataataataaataagttttctttattatttgaagtgtct |
308 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2998301 |
atgaaaaaaaatagacatggaaataagaaatgtgatttttgtaacacaaaatttgaccttcataataataaataagttttctttattatttgaagtgtct |
2998202 |
T |
|
| Q |
309 |
tcgaagactaattgaagataaagataaaatgcatgcactcaatggactaaaatatacctcaacagtagttgcacttgcaatgaggactaccaatgagttt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2998201 |
tcgaagactaattgaagataaagataaaatgcatgcactcaatggactaaaatatacctcaacagtagttgcacttgcaatgaggactaccaatgagttt |
2998102 |
T |
|
| Q |
409 |
cgcaaaggaacggtttggaaaattcttgctgcaacctcttcaagtattgcaacagctttcaatacttattgggatattgtcatggattggggtttgctaa |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2998101 |
cgcaaaggaacggtttggaaaattcttgctgcaacttcttcaagtattgcaacagctttcaatacttattgggatattgtcatggattggggtttgctaa |
2998002 |
T |
|
| Q |
509 |
aaaaggactcaagaaatccatggttaagagataaactctctctgcatgacaaaaatttatattttgttgctatggtaagtttttgttttgttgcaaatat |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2998001 |
aaaaggactcaagaaatccatggttaagagataaactctctctgcatgacaaaaatttatattttgttgctatggtaagtttttgttttgttgcaaatat |
2997902 |
T |
|
| Q |
609 |
gtgtgctcttcattgtttattttatatgggaaaatgtttctgtatta |
655 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2997901 |
gtgtgctcttcattgtttattttatatgggaaaatgtttctgtatta |
2997855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 336 - 592
Target Start/End: Complemental strand, 3016344 - 3016088
Alignment:
| Q |
336 |
aatgcatgcactcaatggactaaaatatacctcaacagtagttgcacttgcaatgaggactaccaatgagtttcgcaaaggaacggtttggaaaattctt |
435 |
Q |
| |
|
|||||||| |||||||||||||||||| | |||||||||||||||||||| |||||||||||| |||||||||| ||||||| || ||||||||||||| |
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|
| T |
3016344 |
aatgcatggactcaatggactaaaatacatctcaacagtagttgcacttgtaatgaggactactaatgagtttcataaaggaatgggttggaaaattctt |
3016245 |
T |
|
| Q |
436 |
gctgcaacctcttcaagtattgcaacagctttcaatacttattgggatattgtcatggattggggtttgctaaaaaaggactcaagaaatccatggttaa |
535 |
Q |
| |
|
||||||| |||||| | ||||||||| | | ||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
3016244 |
gctgcaagttcttcaggcattgcaacaattgttaatacttattgggatattgtcattgattggggtttgctaagaagggactcaagaaatccatggttaa |
3016145 |
T |
|
| Q |
536 |
gagataaactctctctgcatgacaaaaatttatattttgttgctatggtaagttttt |
592 |
Q |
| |
|
|||||||||||||| | | |||||| | |||||||| |||||||||||||||||| |
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|
| T |
3016144 |
gagataaactctctgtaccatacaaaagtgtatattttcttgctatggtaagttttt |
3016088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 290 - 585
Target Start/End: Complemental strand, 3031726 - 3031428
Alignment:
| Q |
290 |
tttattatttgaagtgtcttcgaagactaat---tgaagataaagataaaatgcatgcactcaatggactaaaatatacctcaacagtagttgcacttgc |
386 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||| | | |||||||||| | |||||||| | ||||||| | ||||||| ||||||||||| | |
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|
| T |
3031726 |
tttattatttgaagtgtcttcgaagattattacttgaagagagaaataaaatgcacggactcaatgcattaaaatacatctcaacaatagttgcacttac |
3031627 |
T |
|
| Q |
387 |
aatgaggactaccaatgagtttcgcaaaggaacggtttggaaaattcttgctgcaacctcttcaagtattgcaacagctttcaatacttattgggatatt |
486 |
Q |
| |
|
||||||||||| || ||||| || |||||||||||||||| |||||||||||| || ||| | |||||||||| | | ||||| |||||||||||| |
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|
| T |
3031626 |
aatgaggactattgatcagtttagcccaggaacggtttggaaagttcttgctgcaagttcctcaggcattgcaacagttgttaatacctattgggatatt |
3031527 |
T |
|
| Q |
487 |
gtcatggattggggtttgctaaaaaaggactcaagaaatccatggttaagagataaactctctctgcatgacaaaaatttatattttgttgctatggta |
585 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | | |||||| | |||||||| |||| |||||| |
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|
| T |
3031526 |
gtcattgattggggtttgctaagaaaggactcaagaaatccatggttaagagataaactctctgtaccttacaaaagtgtatattttcttgccatggta |
3031428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 3017041 - 3016876
Alignment:
| Q |
25 |
gtttaggtgcaagcatttagatgtttggaattttatgtttgccactttttctggggggatttcaagaccagatcaaacaagtgcattgaaagtgaaatat |
124 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| |||| ||||||||| | | |
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| T |
3017041 |
gtttaggtgcaagcatttagaagtttggaattctatgtttgctactatttctggggggatttcaagaccagatcaaacaaatgcagtgaaagtgatgtct |
3016942 |
T |
|
| Q |
125 |
ataaaacattttatttaattgttgctatcactccattttggatccgttttcttcaggtatgcatct |
190 |
Q |
| |
|
||||| |||||||||||||||| ||||| | |||||| ||||||||||||||||||||||| |||| |
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|
| T |
3016941 |
ataaagcattttatttaattgtagctattattccattctggatccgttttcttcaggtatgtatct |
3016876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 3032176 - 3031994
Alignment:
| Q |
20 |
ttttcgtttaggtgcaagcatttagatgtttggaattttatgtttgccactttttctggggggatttcaagaccagatcaaacaagtgcattgaaagtga |
119 |
Q |
| |
|
|||| ||| |||| |||||||||||| ||||| |||| ||||||| | ||| ||| | ||||| ||||||| ||||||||||||| ||| ||| | |
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|
| T |
3032176 |
tttttgttcaggttcaagcatttagaagtttgcaattctatgtttactactatttttacggggacttcaagaagagatcaaacaagttcatggaagaaaa |
3032077 |
T |
|
| Q |
120 |
aatatataaaacattttatttaattgttgctatcactccattttggatccgttttcttcaggtatgcatcttccattcatttt |
202 |
Q |
| |
|
| ||||||| ||||||| ||||||| ||||| | |||||| |||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
3032076 |
caactataaaatattttatataattgtagctattattccattctggatccgttttcttcaggtatgcatctgccattcatttt |
3031994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 421 - 609
Target Start/End: Complemental strand, 11328576 - 11328391
Alignment:
| Q |
421 |
gtttggaaaattcttgctgcaacctcttcaagtattgcaacagctttcaatacttattgggatattgtcatggattggggtttgctaaaaaaggactcaa |
520 |
Q |
| |
|
|||||||||||||| ||||||| |||||| | |||||||||| | | ||||| ||||||||||||||||| |||||||||||||| | || |||||| |
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|
| T |
11328576 |
gtttggaaaattctggctgcaagttcttcaggcattgcaacagttgttaatacctattgggatattgtcattgattggggtttgcttagaagaaactcaa |
11328477 |
T |
|
| Q |
521 |
gaaatccatggttaagagataaactctctctgcatgacaaaaatttatattttgttgctatggtaagtttttgttttgttgcaaatatg |
609 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||| | |||||||| ||||||||||| | || |||||||||||||||| |
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|
| T |
11328476 |
aaaatccatggttaagagataaactctctgtgccatacaaaagtgtatattttcttgctatggtagg---ttattttgttgcaaatatg |
11328391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 290 - 392
Target Start/End: Complemental strand, 11328764 - 11328659
Alignment:
| Q |
290 |
tttattatttgaagtgtcttcgaagactaat---tgaagataaagataaaatgcatgcactcaatggactaaaatatacctcaacagtagttgcacttgc |
386 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||| | | |||||||||||| |||||||||||||||||| | ||||||| | ||||||||| | |
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|
| T |
11328764 |
tttattatttgaagtgtcttcgaagattattacttgaagagagaaataaaatgcatggactcaatggactaaaatacatctcaacaatggttgcactttc |
11328665 |
T |
|
| Q |
387 |
aatgag |
392 |
Q |
| |
|
|||||| |
|
|
| T |
11328664 |
aatgag |
11328659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 421 - 609
Target Start/End: Original strand, 20062838 - 20063023
Alignment:
| Q |
421 |
gtttggaaaattcttgctgcaacctcttcaagtattgcaacagctttcaatacttattgggatattgtcatggattggggtttgctaaaaaaggactcaa |
520 |
Q |
| |
|
|||||||||||||| ||||||| |||||| | |||||||||| | | ||||| ||||||||||||||||| |||||||||||||| | || |||||| |
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|
| T |
20062838 |
gtttggaaaattctggctgcaagttcttcaggcattgcaacagttgttaatacctattgggatattgtcattgattggggtttgcttagaagaaactcaa |
20062937 |
T |
|
| Q |
521 |
gaaatccatggttaagagataaactctctctgcatgacaaaaatttatattttgttgctatggtaagtttttgttttgttgcaaatatg |
609 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||| | |||||||| ||||||||||| | || |||||||||||||||| |
|
|
| T |
20062938 |
aaaatccatggttaagagataaactctctgtgccatacaaaagtgtatattttcttgctatggtagg---ttattttgttgcaaatatg |
20063023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 290 - 392
Target Start/End: Original strand, 20062650 - 20062755
Alignment:
| Q |
290 |
tttattatttgaagtgtcttcgaagactaat---tgaagataaagataaaatgcatgcactcaatggactaaaatatacctcaacagtagttgcacttgc |
386 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||| | | |||||||||||| |||||||||||||||||| | ||||||| | ||||||||| | |
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|
| T |
20062650 |
tttattatttgaagtgtcttcgaagattattacttgaagagagaaataaaatgcatggactcaatggactaaaatacatctcaacaatggttgcactttc |
20062749 |
T |
|
| Q |
387 |
aatgag |
392 |
Q |
| |
|
|||||| |
|
|
| T |
20062750 |
aatgag |
20062755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 20061703 - 20061864
Alignment:
| Q |
29 |
aggtgcaagcatttagatgtttggaattttatgtttgccactttttctggggggatttcaagaccagatcaaacaagtgcattgaaagtgaaatatataa |
128 |
Q |
| |
|
|||| ||| |||||||| ||||| |||| ||||||| | ||| ||| | ||||| ||||||| ||||||||||||| || | || || | ||||| |
|
|
| T |
20061703 |
aggttcaaacatttagaagtttgcaattctatgtttactactatttttacggggacttcaagaagagatcaaacaagttcactcaagaggacaactataa |
20061802 |
T |
|
| Q |
129 |
aacattttatttaattgttgctatcactccattttggatccgttttcttcaggtatgcatct |
190 |
Q |
| |
|
|| ||||||| ||||||| ||||| | |||||| |||||||||||||||||||||||||||| |
|
|
| T |
20061803 |
aatattttatataattgtagctattattccattctggatccgttttcttcaggtatgcatct |
20061864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 36015713 - 36015643
Alignment:
| Q |
373 |
gtagttgcacttgcaatgaggactaccaatgagtttcgcaaaggaacggtttggaaaattcttgctgcaac |
443 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||||| |||||||| ||||| ||||||||| |||||||| |
|
|
| T |
36015713 |
gtagttgcctttgcaatgagggatactaatgagtttcacaaaggaatggtttagaaaattctggctgcaac |
36015643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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