View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9317-LTR4-TNT-insertion-3 (Length: 641)

Name: F9317-LTR4-TNT-insertion-3
Description: F9317-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9317-LTR4-TNT-insertion-3
F9317-LTR4-TNT-insertion-3
[»] chr7 (1 HSPs)
chr7 (9-632)||(967784-968407)
[»] chr8 (2 HSPs)
chr8 (174-466)||(31216868-31217164)
chr8 (288-386)||(22358469-22358567)
[»] chr2 (3 HSPs)
chr2 (288-471)||(31774263-31774452)
chr2 (288-356)||(38233203-38233271)
chr2 (407-465)||(45421222-45421280)
[»] chr5 (2 HSPs)
chr5 (179-480)||(6020208-6020515)
chr5 (408-465)||(10487284-10487341)
[»] chr1 (6 HSPs)
chr1 (288-480)||(30970971-30971169)
chr1 (389-481)||(21527847-21527939)
chr1 (407-481)||(48266080-48266154)
chr1 (407-474)||(14365994-14366061)
chr1 (408-480)||(36305489-36305561)
chr1 (389-481)||(36928853-36928945)
[»] scaffold0029 (1 HSPs)
scaffold0029 (389-481)||(134998-135090)
[»] scaffold0002 (2 HSPs)
scaffold0002 (389-481)||(312825-312917)
scaffold0002 (389-481)||(328279-328371)
[»] chr4 (3 HSPs)
chr4 (389-481)||(8655435-8655527)
chr4 (407-465)||(7663616-7663674)
chr4 (409-481)||(47540631-47540703)
[»] scaffold0418 (1 HSPs)
scaffold0418 (407-465)||(7379-7437)
[»] chr6 (2 HSPs)
chr6 (407-481)||(1682750-1682824)
chr6 (407-481)||(33629801-33629875)
[»] chr3 (3 HSPs)
chr3 (407-465)||(30167723-30167781)
chr3 (409-481)||(13448184-13448256)
chr3 (288-356)||(48974381-48974449)


Alignment Details
Target: chr7 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 9 - 632
Target Start/End: Original strand, 967784 - 968407
Alignment:
Q  9 gtttatgaggagattttaaatgttgatatcttgcaatatgaagacattgatgttgaaatagatgagatgaagtcacaaaattcgacggtgcagcaaatcg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  967784 gtttatgaggagattttaaatgttgatatcttgcaatatgaagacattgatgttgaaatagatgagatgaagtcacaaacttcgacggtgcagcaaatcg 967883  T
Q  109 tgattgaaattataatttgagtttctcttttgcagagagctttaaannnnnnnnnnnnnnnnaataagctaaaatgatatattatcaaaccaacaaagca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||    
T  967884 tgattgaaattataatttgagtttctcttttgcagagagctttaaattttttttttttttttaataagctaaaatgatatattatcaaaccaacaaagca 967983  T
Q  209 gtcaacacaacacaaggtgtgtcttaaagactaccaaaaatacactgaattaacagtgacacaaggaactaaacaaaacaacattggcctatgcccaaac 308  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  967984 gtcaacacaacacaaggtgtgtcttagagactaccagaaatacactgaattaacagtgacacaaggaactaaacaaaacaacattggcctatgcccaaac 968083  T
Q  309 aagttaaagggtttgaccaccattgttgagttccataagtaaaaatggnnnnnnnagctttcagtcatcctaaagacaacaccttatcaaacaaataagg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  968084 aagttaaagggtttgaccaccattgttgagttccataagtaaaaatggtttttttagctttcagtcatcctaaagacaacaccttatcaaacaaataagg 968183  T
Q  409 aatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagaggagccaaggttttaaaaattctattaactagttt 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  968184 aatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagaggagccaaggttttaaaaattctattaactagttt 968283  T
Q  509 tttgggttcaactcatttgaatcaactatctcataacaacaaatatagcatcatagccaaggttttattcaagttctcttcaagttcaaaaaatatttcc 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  968284 tttgggttcaactcatttgaatcaactatctcataacaacaaatatagcatcatagccaaggttttattcaagttctcttcaagttcaaaaaatatttcc 968383  T
Q  609 aagaaaaatcaaagaactcaattg 632  Q
    ||||||||||| ||||| ||||||    
T  968384 aagaaaaatcagagaacacaattg 968407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 3e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 174 - 466
Target Start/End: Complemental strand, 31217164 - 31216868
Alignment:
Q  174 aagctaaaatgatatattatcaaaccaacaaagcagtcaacacaacacaaggtgtgtcttaaagactaccaaaaatacactgaattaacagtgacacaag 273  Q
    |||| ||||||||||||||| |||||| |||||||||||||| | ||||||||||| |||| |||||||||||| |||||  |  ||||||  ||||||     
T  31217164 aagccaaaatgatatattat-aaacca-caaagcagtcaacaaagcacaaggtgtgccttagagactaccaaaagtacacaaagataacagaaacacaaa 31217067  T
Q  274 gaactaaacaaaacaacattggcctatgcccaaacaagttaaagggtttgaccaccattgttgagttccataagtaaaaatggnnnnnnnagctttcagt 373  Q
    |||   |||| ||||||||| ||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||        |||||| ||     
T  31217066 gaatccaacataacaacattagcctatgcccaaacaagttaaagggctagaccaccattgctgagttccataagtaaaaatgacatttttagcttttagc 31216967  T
Q  374 catcctaaagacaac------accttatcaaacaaataaggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaa 466  Q
    || ||||||||||||      ||||| |||| |||| | | ||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||    
T  31216966 caacctaaagacaacatcttgaccttttcaagcaaacaggaaatgggaataattacattttaaaacaagcgactattgcgctcattccacacaacccaa 31216868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 288 - 386
Target Start/End: Original strand, 22358469 - 22358567
Alignment:
Q  288 aacattggcctatgcccaaacaagttaaagggtttgaccaccattgttgagttccataagtaaaaatggnnnnnnnagctttcagtcatcctaaagaca 386  Q
    |||||| |||||| ||||| |||||||||||| | |||||||| || ||||||||||||||||||||||       ||||||||| |||||||||||||    
T  22358469 aacattagcctatacccaagcaagttaaagggctagaccaccactgctgagttccataagtaaaaatggcatgtttagctttcagccatcctaaagaca 22358567  T

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Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 288 - 471
Target Start/End: Original strand, 31774263 - 31774452
Alignment:
Q  288 aacattggcctatgcccaaacaagttaaagggtttgaccaccattgttgagttccataagtaaaaatggnnnnnnnagctttcagtcatcctaaagacaa 387  Q
    |||||| |||||| ||||| |||||||||||| | |||||||| || ||||||||||||||||||||||       |||||||||  |||||||||||||    
T  31774263 aacattagcctatacccaagcaagttaaagggctagaccaccactgctgagttccataagtaaaaatggcatttttagctttcagcaatcctaaagacaa 31774362  T
Q  388 ca------ccttatcaaacaaataaggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacaca 471  Q
    ||      ||||||||| |||| | ||||||||||| || ||||||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  31774363 catcttaaccttatcaagcaaacagggaatgggagtaataacatttttaaacaagcgactattgccctcattccacacaactcaagcaca 31774452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 38233271 - 38233203
Alignment:
Q  288 aacattggcctatgcccaaacaagttaaagggtttgaccaccattgttgagttccataagtaaaaatgg 356  Q
    |||||| |||||| ||||||||| |||||||| | || ||||| || |||||||||||| |||||||||    
T  38233271 aacattagcctatacccaaacaaattaaagggctagagcaccactgctgagttccataaataaaaatgg 38233203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 407 - 465
Target Start/End: Original strand, 45421222 - 45421280
Alignment:
Q  407 ggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaaccca 465  Q
    |||||| |||| |||||||| |||||||  ||| ||||||| |||||||||||||||||    
T  45421222 ggaatgtgagttattacattattaaacagacgattattgcgttcattccacacaaccca 45421280  T

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Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 179 - 480
Target Start/End: Original strand, 6020208 - 6020515
Alignment:
Q  179 aaaatgatatattatcaaaccaacaaagcagtcaacacaa-cacaaggtgtgtcttaaagactaccaaaaa-tacactgaattaacagtgacacaaggaa 276  Q
    ||||||||||||||| || |||||||||||| ||||| || ||||||||||| || | |||| || ||||| ||||  || ||||||| ||||||| |||    
T  6020208 aaaatgatatattataaacccaacaaagcagccaacaaaagcacaaggtgtgcctaagagacaactaaaaagtacaaagagttaacagagacacaaagaa 6020307  T
Q  277 ctaaacaaaacaacattggcctatgcccaaacaagttaaagggtttgaccaccattgttgagttccataagtaaaaatggnnnnnnnagctttcagtcat 376  Q
    | |||| ||||| |||  ||||||| ||||||||| ||||||| | |||||||||| || ||||||| |||||||| | |       ||||||||| ||     
T  6020308 ccaaac-aaacagcatcagcctatg-ccaaacaagctaaagggctcgaccaccattcttaagttccaaaagtaaaagtagattttttagctttcagccaa 6020405  T
Q  377 cctaaagacaacacctta------tcaaacaaataaggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacac 470  Q
    ||||||||||||| ||||      |  | ||||   || ||| ||||||||| ||| |||||||||||| |||| |||||||||||||||||||| |||     
T  6020406 cctaaagacaacatcttaactttgttgagcaaacggggtatgtgagtgattatattattaaacaagcgattattacgctcattccacacaacccagacat 6020505  T
Q  471 agaggagcca 480  Q
    | ||||||||    
T  6020506 aaaggagcca 6020515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 465
Target Start/End: Complemental strand, 10487341 - 10487284
Alignment:
Q  408 gaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaaccca 465  Q
    |||||| ||| |||||||| |||||||  ||| |||| ||||||||||||||||||||    
T  10487341 gaatggaagttattacattattaaacagacgattatttcgctcattccacacaaccca 10487284  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 288 - 480
Target Start/End: Complemental strand, 30971169 - 30970971
Alignment:
Q  288 aacattggcctatgcccaaacaagttaaagggtttgaccaccattgttgagttccataagtaaaaatggnnnnnnnagctttcagtcatcctaaagacaa 387  Q
    |||||| |||||| ||||| |||||||||||| | |||||||| || ||||||||| |||||||||||        ||||| ||| || |||||||||||    
T  30971169 aacattagcctatacccaagcaagttaaagggctagaccaccactgctgagttccaaaagtaaaaatgacatttttagcttgcagccaacctaaagacaa 30971070  T
Q  388 cacctta------tcaaacaaataaggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagaggagcca 480  Q
     | ||||      | || || | | ||||||||||| |  ||||| |||||||| |||||||||||||||| ||||||||||||| |||| ||||||||    
T  30971069 taacttaatcttataaagcagacagggaatgggagtaaaaacattgttaaacaatcgactattgcgctcatgccacacaacccaagcacaaaggagcca 30970971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 389 - 481
Target Start/End: Original strand, 21527847 - 21527939
Alignment:
Q  389 accttatcaaacaaataaggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagaggagccaa 481  Q
    |||||||| ||||||   ||||||||||| |||||||| |||||||  ||| |||| ||||||||||||||||||||  ||||||| ||||||    
T  21527847 accttatctaacaaacggggaatgggagttattacattattaaacagtcgattatttcgctcattccacacaacccaggcacagagaagccaa 21527939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 407 - 481
Target Start/End: Complemental strand, 48266154 - 48266080
Alignment:
Q  407 ggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagaggagccaa 481  Q
    |||||| |||| |||||||| |||||||  ||| |||| |||||||||||||||||||| |||||||| ||||||    
T  48266154 ggaatgagagttattacattattaaacagacgattatttcgctcattccacacaacccagacacagagaagccaa 48266080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 407 - 474
Target Start/End: Complemental strand, 14366061 - 14365994
Alignment:
Q  407 ggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagag 474  Q
    |||||| |||| |||||||| |||||||  ||| |||| ||||||||||||||||||||| |||||||    
T  14366061 ggaatgagagttattacattattaaacagacgattatttcgctcattccacacaacccaagcacagag 14365994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 480
Target Start/End: Original strand, 36305489 - 36305561
Alignment:
Q  408 gaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagaggagcca 480  Q
    |||||||||| |||||||| |||||||  ||| |||| || ||||||||||||||||| ||||| || |||||    
T  36305489 gaatgggagttattacattattaaacagacgattatttcgttcattccacacaacccagacacaaagtagcca 36305561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 389 - 481
Target Start/End: Original strand, 36928853 - 36928945
Alignment:
Q  389 accttatcaaacaaataaggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagaggagccaa 481  Q
    ||||| || ||||||  ||| |||||||| || ||||| |||||||  ||| |||| || |||||||||||||||||| |||| || ||||||    
T  36928853 accttgtctaacaaacgagggatgggagttataacattattaaacagacgattatttcgttcattccacacaacccaagcacaaagtagccaa 36928945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 389 - 481
Target Start/End: Complemental strand, 135090 - 134998
Alignment:
Q  389 accttatcaaacaaataaggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagaggagccaa 481  Q
    |||||||| ||||||   ||||||||||| |||||||| ||||||| |||| |||| ||||||||| ||||||||||| ||||||| ||||||    
T  135090 accttatctaacaaacggggaatgggagttattacattattaaacaggcgattatttcgctcattcgacacaacccaagcacagagaagccaa 134998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 389 - 481
Target Start/End: Complemental strand, 312917 - 312825
Alignment:
Q  389 accttatcaaacaaataaggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagaggagccaa 481  Q
    |||||||| ||||||   ||||||||||| |||||||| ||||||| |||| |||| ||||||||| ||||||||||| ||||||| ||||||    
T  312917 accttatctaacaaacggggaatgggagttattacattattaaacaggcgattatttcgctcattcgacacaacccaagcacagagaagccaa 312825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 389 - 481
Target Start/End: Complemental strand, 328371 - 328279
Alignment:
Q  389 accttatcaaacaaataaggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagaggagccaa 481  Q
    |||||||| ||||||   ||||||||||| |||||||| ||||||| |||| |||| ||||||||| ||||||||||| ||||||| ||||||    
T  328371 accttatctaacaaacggggaatgggagttattacattattaaacaggcgattatttcgctcattcgacacaacccaagcacagagaagccaa 328279  T

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Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 389 - 481
Target Start/End: Complemental strand, 8655527 - 8655435
Alignment:
Q  389 accttatcaaacaaataaggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagaggagccaa 481  Q
    |||||||| ||||||   ||||||||||| |||||||| ||||||| |||| |||| ||||||||||||||||||||  ||||||| ||||||    
T  8655527 accttatctaacaaacggggaatgggagttattacattattaaacaggcgattatttcgctcattccacacaacccaggcacagagaagccaa 8655435  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 407 - 465
Target Start/End: Complemental strand, 7663674 - 7663616
Alignment:
Q  407 ggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaaccca 465  Q
    |||||| |||| |||||||| |||||||  ||| ||||||| |||||||||||||||||    
T  7663674 ggaatgagagttattacattattaaacagacgattattgcgttcattccacacaaccca 7663616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 481
Target Start/End: Original strand, 47540631 - 47540703
Alignment:
Q  409 aatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagaggagccaa 481  Q
    |||| |||| |||||||| |||||||  ||| |||| || |||||||||||||||||  ||||||| ||||||    
T  47540631 aatgagagttattacattattaaacagacgattatttcgttcattccacacaacccaggcacagagaagccaa 47540703  T

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Target: scaffold0418 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 407 - 465
Target Start/End: Original strand, 7379 - 7437
Alignment:
Q  407 ggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaaccca 465  Q
    |||||| |||| |||||||| |||||||  ||| ||||||| |||||||||||||||||    
T  7379 ggaatgagagttattacattattaaacagacgattattgcgttcattccacacaaccca 7437  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 407 - 481
Target Start/End: Original strand, 1682750 - 1682824
Alignment:
Q  407 ggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagaggagccaa 481  Q
    |||||| |||| |||||||| |||||||  ||| |||| || |||||||||||||||||  ||||||| ||||||    
T  1682750 ggaatgagagttattacattattaaacagacgattatttcgttcattccacacaacccaggcacagagaagccaa 1682824  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 407 - 481
Target Start/End: Original strand, 33629801 - 33629875
Alignment:
Q  407 ggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagaggagccaa 481  Q
    ||||||||||| |||| ||| ||||||| |||| |||| || | |||||||||||||||  ||||||| ||||||    
T  33629801 ggaatgggagttattatattattaaacaggcgattatttcgttaattccacacaacccaggcacagagaagccaa 33629875  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 407 - 465
Target Start/End: Complemental strand, 30167781 - 30167723
Alignment:
Q  407 ggaatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaaccca 465  Q
    |||||| |||| |||||||| |||||||  ||| ||||||| |||||||||||||||||    
T  30167781 ggaatgagagttattacattattaaacagacgattattgcgttcattccacacaaccca 30167723  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 481
Target Start/End: Original strand, 13448184 - 13448256
Alignment:
Q  409 aatgggagtgattacatttttaaacaagcgactattgcgctcattccacacaacccaaacacagaggagccaa 481  Q
    ||||||||| |||||||| |||||||  ||| |||| || |||||||||||||| ||  ||||||| ||||||    
T  13448184 aatgggagttattacattattaaacagacgattatttcgttcattccacacaactcaggcacagagaagccaa 13448256  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 48974381 - 48974449
Alignment:
Q  288 aacattggcctatgcccaaacaagttaaagggtttgaccaccattgttgagttccataagtaaaaatgg 356  Q
    |||||| |||||| ||||| |||||||| ||  | |||||||| || ||||||||| ||||||||||||    
T  48974381 aacattagcctatacccaagcaagttaacggactagaccaccactgctgagttccaaaagtaaaaatgg 48974449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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