View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9317-LTR4-TNT-insertion-5 (Length: 342)
Name: F9317-LTR4-TNT-insertion-5
Description: F9317-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9317-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 334
Target Start/End: Complemental strand, 43610366 - 43610040
Alignment:
| Q |
8 |
ctcatgaaccttagctttgaagggtaagttttaagcaactgagcctgtttttattttgaacattttggttcagtatgagtgtatacagtcttgagccaaa |
107 |
Q |
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| T |
43610366 |
ctcatgaaccttagctttgaagggtaagttttaagcaactgagcctgtttttattttgaacattttggttcagtatgagtgtatacagtcttgagccaaa |
43610267 |
T |
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| Q |
108 |
caaatgagacaatgtaacttgtgtgcataataacaaaaggaaattatccaaaaggcatggaattaaattatgctacctgaagtacaatccacaaactcca |
207 |
Q |
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| T |
43610266 |
caaatgagacaatgtaacttgtgtgcataataacaaaaggaaattatccaaaaggcatggaattaaattatgctacctgaagtacaatccacaaactcca |
43610167 |
T |
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| Q |
208 |
ggtaatggtagttaggaacaagagtaaagaacccaaaatccattttttgtcatatgattcactatcttcatgttgttgatagttgtgatgatatccagat |
307 |
Q |
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| T |
43610166 |
ggtaatggtagttaggaacaagagtaaagaacccaaaatccattttttgtcatatgattcactatcttcatgttgttgatagttgtgatgatatccagat |
43610067 |
T |
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| Q |
308 |
gggaggtgacgtgcaattcgtaattgg |
334 |
Q |
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| T |
43610066 |
gggaggtgacgtgcaattcgcaattgg |
43610040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 181 - 329
Target Start/End: Complemental strand, 43603784 - 43603636
Alignment:
| Q |
181 |
tacctgaagtacaatccacaaactccaggtaatggtagttaggaacaagagtaaagaacccaaaatccattttttgtcatatgattcactatcttcatgt |
280 |
Q |
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| T |
43603784 |
tacctgaaatacaatccacaaactccacatgactgtggctaggaacaagaggaaagaacccaaaatccattttttctcatgtgattcactatctttatgt |
43603685 |
T |
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| Q |
281 |
tgttgatagttgtgatgatatccagatgggaggtgacgtgcaattcgta |
329 |
Q |
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| T |
43603684 |
tgttgatagttgtgatgatatccagataggagatgccgcgcaatccgta |
43603636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 168 - 334
Target Start/End: Complemental strand, 43616832 - 43616665
Alignment:
| Q |
168 |
aattaaatta-tgctacctgaagtacaatccacaaactccaggtaatggtagttaggaacaagagtaaagaacccaaaatccattttttgtcatatgatt |
266 |
Q |
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|||||||||| || |||||||||||||| |||||| ||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43616832 |
aattaaattaatggtacctgaagtacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgatt |
43616733 |
T |
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| Q |
267 |
cactatcttcatgttgttgatagttgtgatgatatccagatgggaggtgacgtgcaattcgtaattgg |
334 |
Q |
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| T |
43616732 |
catgatattcatgttcttgattgttgtgatgatatccagatagaagatgacgcgcgatccgtaattgg |
43616665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 43603968 - 43603912
Alignment:
| Q |
8 |
ctcatgaaccttagctttgaagggtaagttttaagcaactgagcctgtttttatttt |
64 |
Q |
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||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
43603968 |
ctcatgaaccttaatcttgaagggtaacttttaagtaactgagcctgtttttatttt |
43603912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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