View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9317-LTR4-TNT-insertion-6 (Length: 470)
Name: F9317-LTR4-TNT-insertion-6
Description: F9317-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9317-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 31 - 460
Target Start/End: Complemental strand, 32965869 - 32965440
Alignment:
| Q |
31 |
cctattatcacattggcatttgtgaacttataggaaactagaattaattaacatactcacaaagtcctataataggaggaagacttgcaagcttggcata |
130 |
Q |
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| T |
32965869 |
cctattatcacattggcatttgtgaacttataggaaactagaattaattaacatactcacaaagtcctataataggaggaagacttgcaagcttggcata |
32965770 |
T |
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| Q |
131 |
actaattccctggaaaataatttcaataattaaatacgatgagtattaaaaaagctattaattattaaacaagttaacctgagggatggccaagctagca |
230 |
Q |
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| T |
32965769 |
actaattccctggaaaataatttcaataattaaatacgatgagtattaaaaaagctattaattattaaacaagttaacctgagggatggccaagctagca |
32965670 |
T |
|
| Q |
231 |
atggtgaggccagatataaggtcagctttaaggagtttgaaattgtaattaggtaaccactgaagaataggnnnnnnntattgagctccaaggattaatt |
330 |
Q |
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| T |
32965669 |
atggtgaggccagatataaggtcagctttaaggagtttgaaattgtaattaggtaaccactgaagaataggaaaaaaatattgagctccaaggattaatt |
32965570 |
T |
|
| Q |
331 |
ttctgttacatggttgtcccttgaattgtcgcataggatcatcagggaaaaatgtttccttgaatttggtcctgactttttgtacagtgctcatgtgggg |
430 |
Q |
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| T |
32965569 |
ttctgttacatggttgtcccttgaattgtcgcataggatcatcagggaaaaatgtttccttgaatttggtcctgactttttgtacagtgctcatgtgggg |
32965470 |
T |
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| Q |
431 |
tggtggaacaacttcatgtacatctaattg |
460 |
Q |
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| T |
32965469 |
tggtggaacaacttcatgtacatccaattg |
32965440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 393
Target Start/End: Complemental strand, 32954442 - 32954255
Alignment:
| Q |
206 |
aacctgagggatggccaagctagcaatggtgaggccagatataaggtcagctttaaggagtttgaaattgtaattaggtaaccactgaagaataggnnnn |
305 |
Q |
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|||||| |||||||| ||||||||||| ||||| ||||| | |||||||| ||||| ||||||||| | ||| ||| ||| ||||||||||| |
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| T |
32954442 |
aacctgtgggatggctaagctagcaatagtgagaccagaaacaaggtcagatttaaagagtttgaagctataaatagaaccccattgaagaatagggaaa |
32954343 |
T |
|
| Q |
306 |
nnntattgagctccaaggattaattttctgttacatggttgtcccttgaattgtcgcataggatcatcagggaaaaatgtttccttga |
393 |
Q |
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|||| |||||| | ||||| | || | | | || |||||| |||||||| || | |||||||||||||||||| |||||||||| |
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| T |
32954342 |
aaatatttagctcctaagattagtcttttttgaagtgtttgtcctttgaattggcgtaaaggatcatcagggaaaaaagtttccttga |
32954255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 32954559 - 32954526
Alignment:
| Q |
108 |
ggaagacttgcaagcttggcataactaattccct |
141 |
Q |
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| T |
32954559 |
ggaagatttgcaagcttggcataactaattccct |
32954526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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