View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9317-LTR4-TNT-insertion-7 (Length: 611)
Name: F9317-LTR4-TNT-insertion-7
Description: F9317-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9317-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 7 - 601
Target Start/End: Complemental strand, 23522711 - 23522117
Alignment:
| Q |
7 |
agtataaaacaaagcagagcaaatacatgtataattccaacttcattctggcaagtgcatgctgggaaattcacatattgttgtctgcagttgataattt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23522711 |
agtataaaacaaagcagagcaaatacatgtataattccaacttcattctggcaagtgcatgctgggaaattcacatattgttgtctgcagttgataattt |
23522612 |
T |
|
| Q |
107 |
tattttagtaacttatatggatgtatttcctatacatatacaaaatacatgtttttcttattcaacctatacagaatacataaacatcaacgtaatattg |
206 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23522611 |
tattttagtaacttatatggatgtatttcttatacatatacaaaatacatgtttttcttattcaacctatacagaatacataaacatcaacgtaatattg |
23522512 |
T |
|
| Q |
207 |
tattttaccaactgcttctatgtccaactgcacataactaatctaattttgcaggctttacatgatttcctattctgatcacgatgccatcaatatctct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23522511 |
tattttaccaactgcttctatgtccaactgcacataactaatctaattttgcaggctttacatgatttcccattctgatcacgatgccatcaatatctct |
23522412 |
T |
|
| Q |
307 |
cacgtacccaaccttttggccccactccttcatctctggttcgctcaccggcaccgctccgttctccacggccctctgaaacatcaaatatataatcaat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23522411 |
cacgtacccaaccttttggccccactccttcatctctggttcgctcaccggcaccgctccgttctccacggccctctgaaacatcaaatatataatcaat |
23522312 |
T |
|
| Q |
407 |
cagtcagcaacaaaattaaacataaatcattcgttaaattctaaagcatttgatttctagttctagctgtaaattatggttcccaactacatgtagcaag |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23522311 |
cagtcagcaacaaaattaaacataaatcattcgttaaattctaaagcatttgatttctagttctagctgtaaattatggttcccaactacatgtagcaag |
23522212 |
T |
|
| Q |
507 |
aaaaccattgtattactcccatccctaaatatatgaatcttttttnnnnnnngagtcctttttataagaccctctttgaattttaaagagcatta |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23522211 |
aaaaccattgtattactcccatccctaaatatatgaatcttttttaaaaaaagagtcctttttataagaccctctttgaattttaaagagcatta |
23522117 |
T |
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