View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9317-LTR4-TNT-insertion-8 (Length: 584)
Name: F9317-LTR4-TNT-insertion-8
Description: F9317-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9317-LTR4-TNT-insertion-8 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 539; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 12 - 574
Target Start/End: Complemental strand, 11589704 - 11589142
Alignment:
| Q |
12 |
gtgggcatcattatccaaatcataatacaacccagaaataatagcaccactaataaccttattatagattgagcctcacgattcatattttttccttctt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11589704 |
gtgggcatcattatccaaatcataatacaacccagaaataatagcaccactaataaccttattatagattgagcctcacgattcatattttttccttctt |
11589605 |
T |
|
| Q |
112 |
ttgggtcgtatgtaaaataacttgcagtgttgtatgtttagctcctactgtgacagctaaatatgttgaatcaactaggaaggatgctctaattgtcttg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11589604 |
ttgggtcgtatgtaaaataacttgcagtgttgtatgtttagctcctactgtgacagctaaatatgttgaatcaactaggaaggatgctctaattgtcttg |
11589505 |
T |
|
| Q |
212 |
ttacatggtttttattacgcttgnnnnnnnngtttttgcatcagcttctttgtcaagctaaggtggaaatagaagttacatggttgcattgaaaaatgca |
311 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11589504 |
ttacatggtttttattacgcttgaaaaaaaagtttttgcatcagcttctttgtcaagctaaggtggaaatagaagttacatggttgcattgaaaaatgca |
11589405 |
T |
|
| Q |
312 |
tcatctattagagtatggctgctagcagcactggctttgacatatcattgctatcttgttttatcaattggaggtacgtaataaaaatctaatgtgcgag |
411 |
Q |
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| T |
11589404 |
tcatctattagagtatggctgctagcagcactggctttgacatatcattgctatcttgttttatcaattggaggtacgtaataaaaatctaatgtgcgag |
11589305 |
T |
|
| Q |
412 |
ttaaattttaaagagaatttgattataatttattcaatatttctatttttctatgaactgtcagtggtgctttgggtattagtgaggttggaaatttttt |
511 |
Q |
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| T |
11589304 |
ttaaattttaaagagaatttgattataatttattcaatatttctatttttctatgaactgtcagtggtgctttgggtattagtgaggttggaaatttttt |
11589205 |
T |
|
| Q |
512 |
cagtggaatttcctttcaatgctcaagtccttttgaaattgaaaacaaaattaaggtaaatta |
574 |
Q |
| |
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| T |
11589204 |
cagtggaatttcctttcaatgctcaagtccttttgaaattgaaaacaaaattaaggtaaatta |
11589142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 133 - 574
Target Start/End: Complemental strand, 11586178 - 11585736
Alignment:
| Q |
133 |
ttgcagtgttgtatgtttagctcctactgtgacagctaaatatgttgaatcaactaggaaggatgctctaattgtctt-gttacatggtttttattacgc |
231 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
11586178 |
ttgcagtgttgtacatttagctcctactgtgacagctaaatatgttgaatcaactaggaagggtgctctaattgtcttcgttacatggtttttattacgt |
11586079 |
T |
|
| Q |
232 |
ttgnnnnnnnngttt-ttgcatcagcttctttgtcaagctaaggtggaaatagaagttacatggttgcattgaaaaatgcatcatctattagagtatggc |
330 |
Q |
| |
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||| |||| |||| |||||||| |||| ||||||||||||||||| |||||||||||||| ||||||||| |||||| |||||||| |
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| T |
11586078 |
ttgaagaagaaaaaaattgcctcagtttctttgtgaagccaaggtggaaatagaagtaacatggttgcattggaaaatgcatattctattgaagtatggc |
11585979 |
T |
|
| Q |
331 |
tgctagcagcactggctttgacatatcattgctatcttgttttatcaattgg---------aggtacgtaataaaaatctaatgtgcgagttaaatttta |
421 |
Q |
| |
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|||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||| |
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| T |
11585978 |
tgctagtagcactggctttgactgagcattgctatcttgttttatcaattggagggatttcaggtacgtaataaaaatctaatgtacaagttaaatttta |
11585879 |
T |
|
| Q |
422 |
aagagaatttgattataatttattcaatatttctatttttctatgaactgtcagtggtgctttgggtattagtgaggttggaaattttttcagtggaatt |
521 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| |||||| ||||||||||||||| |
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| T |
11585878 |
aagagaatctgatgataatttattcaatatttctatttttcta-gaa---------gtgttttgggtattagtgaggatggaaaatttttcagtggaatt |
11585789 |
T |
|
| Q |
522 |
tcctttcaatgctcaagtccttttgaaattgaaaacaaaattaaggtaaatta |
574 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
11585788 |
tcctttcaatgctcaagtccttttgatattggaaacaaaattaaggtaaatta |
11585736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 11103254 - 11103145
Alignment:
| Q |
15 |
ggcatcattatccaaatcataatacaacccagaaataatagcaccactaataaccttattatagattgagcctcacgattcatattttttccttcttttg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
11103254 |
ggcatcattatccaaatcataatacaacccagaaataatagcaccactaataaccttattatagattgagcctcatgagccatattttttccttcttttg |
11103155 |
T |
|
| Q |
115 |
ggtcgtatgt |
124 |
Q |
| |
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|||||||||| |
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| T |
11103154 |
ggtcgtatgt |
11103145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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