View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9317-LTR4-TNT-insertion-9 (Length: 526)
Name: F9317-LTR4-TNT-insertion-9
Description: F9317-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9317-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 7 - 445
Target Start/End: Original strand, 41526948 - 41527386
Alignment:
| Q |
7 |
attaagttgttttttatgtgaagtgggccaataatataggttggatttatgtgaaactagtgctagagtttggaattatatgcttaatcagatcctttgt |
106 |
Q |
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| T |
41526948 |
attaagttgttttttatgtgaagtgggccaataatataggttggatttatgtgaaattagtgctagagtttggaattatatgcttaatcagatcctttgt |
41527047 |
T |
|
| Q |
107 |
tagtgctgcaattctgcaggttttggagctaaattgagttgtgttttaccgcataattatgcaaacttttgtatctaaactgtttttgtaggcaccttta |
206 |
Q |
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| T |
41527048 |
tagtgctgcaattctgcaggttttggagctaaattgagttgtgttttaccgcataattatgcaaacttttgtatctaaactgtttttgtaggcaccttta |
41527147 |
T |
|
| Q |
207 |
cggtttgttataactatattagactgtgaattgttggatgttagtaatgaaacacttggtcttggtatatgtatgaaatattaactatagaagtgtacgc |
306 |
Q |
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| T |
41527148 |
cggtttgttataactatattagactgtgaattgttggatgttagtaatgaaacacttggtcttggtatatgtatgaaatattaactatagaagtgtacgc |
41527247 |
T |
|
| Q |
307 |
aaatgcaatggagtgaaactgctactgagttatagtatgagtacatcaaggagcatgaaaatgaaacttgagtgtttttctttttcctctcatacaatgg |
406 |
Q |
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| T |
41527248 |
aaatgcaatggagtgaaactgctactgagttatagtatgagtacatcaaggagcatgaaaatgaaacttgagtgtttttctttttcctctcatacaatgg |
41527347 |
T |
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| Q |
407 |
taatcatcgtgatgtgataacaaaagctatggttaagta |
445 |
Q |
| |
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| T |
41527348 |
taatcatcgtgatgtgataacaaaagctatggttaagta |
41527386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 415
Target Start/End: Complemental strand, 1241763 - 1241362
Alignment:
| Q |
16 |
ttttttatgtgaagtgggccaataatataggttggatttatgtgaaactagtgctagagtttggaattatatgcttaatcagatcctttgttagtgctgc |
115 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| || |
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| T |
1241763 |
ttttttatgtgaagtgggccac-aatatgggttggagttatgtgaaattagtgctagagtttggaattatatgcttaatcggatcctttgttggtgttga |
1241665 |
T |
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| Q |
116 |
aattctgcaggttttggagctaaattgagttgtgttttaccgcataattatgcaaacttttgtatctaaactgtttttgtaggca---cctttacggttt |
212 |
Q |
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| T |
1241664 |
agttctccaggttttggagctaaatcgagttgtgttttaacgtataattatgcaaacttttgtatctaaactgtttttgtaggcacctcctttacggttt |
1241565 |
T |
|
| Q |
213 |
gttataactatattagactgtgaattgttggatgttagtaatgaaacacttggtcttggtatatgtatgaaatattaactatagaagtgtacgcaaatgc |
312 |
Q |
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||||||||| | |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1241564 |
gttataactgtgttaggctgtgaattgttggatgttagtaatgaaacacttgctcttgg--tatgtatgaaatattaactatagaagtgtacgcaaatgc |
1241467 |
T |
|
| Q |
313 |
aatggagtgaaactgctactgagttatagtatgag--tacatcaaggagcatgaaaatgaaacttgagtgtttttctttttcctctcatacaatggtaat |
410 |
Q |
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|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||| |
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| T |
1241466 |
aatggagtgaaacttctactgagttatagtatgagtatatatcaaggagcatgaaaatgaaatttgagcgttttactttttcctctcatacagtggtaat |
1241367 |
T |
|
| Q |
411 |
catcg |
415 |
Q |
| |
|
||||| |
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| T |
1241366 |
catcg |
1241362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 472309 - 472280
Alignment:
| Q |
7 |
attaagttgttttttatgtgaagtgggcca |
36 |
Q |
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| T |
472309 |
attaagttgttttttatgtgaagtgggcca |
472280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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