View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9318-LTR4-TNT-insertion-1 (Length: 220)
Name: F9318-LTR4-TNT-insertion-1
Description: F9318-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9318-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 19336463 - 19336662
Alignment:
| Q |
9 |
caagttcattccttgactactgataaacatctgggaatcttggccactttggtgaactgcaaagatgaagtttcgtcaaattggtcaagaaatttttcca |
108 |
Q |
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| T |
19336463 |
caagttcattccttgactactgataaacatctgggaatcttggccactttggtgaactgcaaagatgaagtttcgtcaaattggtcaagaaatttttcca |
19336562 |
T |
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| Q |
109 |
atctgctcagagctatttttcattttatcaattttggtactgttaaaatagcctcagaatgagagatactcttcttcaactggaatgaatttatgaagaa |
208 |
Q |
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| T |
19336563 |
atctgctcagagctatttttcattttatcaattttggtactgttaaaatagcctcagaatgagagatactcttcttcaactggaatgaatttatgaagaa |
19336662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 19427159 - 19427262
Alignment:
| Q |
74 |
tgaagtttcgtcaaattggtcaagaaatttttccaatctgctcagagctatttttcattttatcaattttggtactgttaaaatagcctcagaatgagag |
173 |
Q |
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||||||||| |||||||| |||||||||||||||| |||||||||| |||||| ||||||||||||||||||| ||||||| ||||||| |||||||| |
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| T |
19427159 |
tgaagtttcatcaaattgatcaagaaatttttccatgctgctcagagatattttatattttatcaattttggtacagttaaaacagcctcaaaatgagag |
19427258 |
T |
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| Q |
174 |
atac |
177 |
Q |
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|||| |
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| T |
19427259 |
atac |
19427262 |
T |
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