View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9319-LTR4-TNT-insertion-2 (Length: 171)
Name: F9319-LTR4-TNT-insertion-2
Description: F9319-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9319-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 8e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 8e-78
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 483220 - 483370
Alignment:
| Q |
11 |
tggatggtaaagaccaagagtcaaccatcttttgcaaaatcaatatcacatttggaagtttatttatatataaaaagttagcaacaacgacaaaaacaga |
110 |
Q |
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| T |
483220 |
tggatggtaaagaccaagagtcaaccatcttttgcaaaatcaatatcacatttggaagtttatttatatataaaaagttagcaacaacgacaaaaacaga |
483319 |
T |
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| Q |
111 |
aaattaactaaccaaatataaattgatcaaggcttctatttgacaagaatt |
161 |
Q |
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| T |
483320 |
aaattaactaaccaaatataaattgatcaaggcttctatttgacatgaatt |
483370 |
T |
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