View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9319-LTR4-TNT-insertion-5 (Length: 58)
Name: F9319-LTR4-TNT-insertion-5
Description: F9319-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9319-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 36466517 - 36466558
Alignment:
| Q |
8 |
aatgagtgttgtaaacttgttttagtttgtggtttgtaattg |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
36466517 |
aatgagtgttgtaaacttgttttagtttgtggtttgtaattg |
36466558 |
T |
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