View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9319-LTR4-TNT-insertion-7 (Length: 555)

Name: F9319-LTR4-TNT-insertion-7
Description: F9319-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9319-LTR4-TNT-insertion-7
F9319-LTR4-TNT-insertion-7
[»] chr3 (8 HSPs)
chr3 (8-545)||(3849926-3850463)
chr3 (286-360)||(47856619-47856687)
chr3 (496-545)||(25107305-25107354)
chr3 (497-545)||(9367833-9367881)
chr3 (387-417)||(47856566-47856596)
chr3 (387-417)||(47857464-47857494)
chr3 (497-545)||(25108383-25108431)
chr3 (497-545)||(29192127-29192175)
[»] chr5 (3 HSPs)
chr5 (8-545)||(37992096-37992624)
chr5 (497-539)||(22869703-22869745)
chr5 (497-545)||(20857024-20857072)
[»] chr8 (2 HSPs)
chr8 (10-114)||(37139667-37139771)
chr8 (497-545)||(11761932-11761980)
[»] chr7 (6 HSPs)
chr7 (497-545)||(5457195-5457243)
chr7 (286-360)||(18855782-18855850)
chr7 (497-545)||(12644093-12644141)
chr7 (497-545)||(4226217-4226265)
chr7 (497-545)||(43124440-43124488)
chr7 (497-545)||(45914616-45914664)
[»] chr6 (1 HSPs)
chr6 (497-545)||(26463271-26463319)
[»] chr1 (6 HSPs)
chr1 (497-545)||(31197152-31197200)
chr1 (495-545)||(42534301-42534351)
chr1 (497-545)||(4960632-4960680)
chr1 (497-545)||(13295227-13295275)
chr1 (497-545)||(17662138-17662186)
chr1 (497-545)||(34849103-34849151)
[»] chr2 (5 HSPs)
chr2 (448-545)||(11347515-11347613)
chr2 (286-359)||(39936375-39936442)
chr2 (495-545)||(44045288-44045338)
chr2 (497-545)||(3653368-3653416)
chr2 (497-545)||(25623380-25623428)
[»] chr4 (7 HSPs)
chr4 (497-545)||(56014817-56014865)
chr4 (286-360)||(1178225-1178293)
chr4 (497-545)||(24349766-24349814)
chr4 (497-545)||(41582539-41582587)
chr4 (497-545)||(54434281-54434329)
chr4 (497-545)||(55867402-55867450)
chr4 (497-545)||(56015935-56015983)


Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 8 - 545
Target Start/End: Original strand, 3849926 - 3850463
Alignment:
Q  8 gtttcttcacaacaacaggtagaagacgtaaaaaatgaaactttagcatttccagttagtttcaccatgggttttgctatgaaaaggaaaagtatgaaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3849926 gtttcttcacaacaacaggtagaagacgtaaaaaatgaaactttagcatttccagttagtttcaccatgggttttgctatgaaaaggaaaagtatgaaat 3850025  T
Q  108 ggttgaggaaatgtgtggaagataaggaattttgttcttgctgatgaacaaacacgttggataaatttgagattgttgaagatgaatattgttggaagag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3850026 ggttgaggaaatgtgtggaagataaggaattttgttcttgctgatgaacaaacacgttggataaatttgagattgttgaagatgaatattgttggaagag 3850125  T
Q  208 aaacaggggtttgttgtaatgaaaatggatgagagaaagtatgttgatttcagttttgattctaattttgtaagtgaggaaggtgatgaataatcatgtg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3850126 aaacaggggtttgttgtaatgaaaatggatgagagaaagtatgttgatttcagttttgattctaattttgtaagtgaggaaggtgatgaataatcatgtg 3850225  T
Q  308 tatatgatgaaggaggaagaggaaggatgttatggagaggttggtggtggtgtgcgatgcnnnnnnnnnnnnnnnnnnngagtgaaggttttgagaagat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||    
T  3850226 tatatgatgaaggaggaagaggaaggatgttatggagaggttggtggtggtgtgcgatgcagagaagagaagagaagaggagtgaaggttttgagaagat 3850325  T
Q  408 gacatcagggnnnnnnnngtcctttcatgtttgtctaaggggtatttttgtcttttcccaacggtctgagaagagaaggggtaaattgctgacgtggcag 507  Q
    ||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3850326 gacatcagggttttttttgtcctttcatgtttgtctaaggggtatttttgtcttttcccaacggtctgagaagagaaggggtaaattgctgacgtggcag 3850425  T
Q  508 tgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3850426 tgattaacaaggatgagggacgaaattttaaacgatta 3850463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 47856687 - 47856619
Alignment:
Q  286 gaaggtgatgaataatcatgtgtatatgatgaaggaggaagaggaaggatgttatggagaggttggtggtggtgt 360  Q
    |||||||||||||||||||| ||| ||||||||||||      |||||| |||||||||||||||||||| ||||    
T  47856687 gaaggtgatgaataatcatgagtagatgatgaaggag------gaaggaggttatggagaggttggtggttgtgt 47856619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 496 - 545
Target Start/End: Complemental strand, 25107354 - 25107305
Alignment:
Q  496 ctgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    ||||||||||||||||||||   ||||||||||||||||||||| |||||    
T  25107354 ctgacgtggcagtgattaactgtgatgagggacgaaattttaaatgatta 25107305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 9367881 - 9367833
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    ||||||||||||||||||   |||||||||||||||||||||| |||||    
T  9367881 tgacgtggcagtgattaattgggatgagggacgaaattttaaatgatta 9367833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 417
Target Start/End: Complemental strand, 47856596 - 47856566
Alignment:
Q  387 gagtgaaggttttgagaagatgacatcaggg 417  Q
    |||||||||||||||||||||||||||||||    
T  47856596 gagtgaaggttttgagaagatgacatcaggg 47856566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 417
Target Start/End: Original strand, 47857464 - 47857494
Alignment:
Q  387 gagtgaaggttttgagaagatgacatcaggg 417  Q
    |||||||||||||||||||||||||||||||    
T  47857464 gagtgaaggttttgagaagatgacatcaggg 47857494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Original strand, 25108383 - 25108431
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||||   ||||| ||||||||||||||| |||||    
T  25108383 tgacgtggcagtgattaactgtgatgaaggacgaaattttaaatgatta 25108431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 29192175 - 29192127
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    ||||||||||||||||||   ||| |||||||||||||||||| |||||    
T  29192175 tgacgtggcagtgattaatcgggaagagggacgaaattttaaatgatta 29192127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 8 - 545
Target Start/End: Original strand, 37992096 - 37992624
Alignment:
Q  8 gtttcttcacaacaacaggtagaagacgtaaaaaatgaaactttagcatttccagttagtttcaccatgggttttgctatgaaaaggaaaagtatgaaat 107  Q
    ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37992096 gtttctttacaacaacatgtagaagacgtaaaaaatggaactttagcatttccagttagtttcaccatgggttttgctatgaaaaggaaaagtatgaaat 37992195  T
Q  108 ggttgaggaaatgtgtggaagataaggaattttgttcttgctgatgaacaaacacgttggataaatttgagattgttgaagatgaatattgttggaagag 207  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37992196 ggttgaggaaaagtgtggaagataaggaattttgttcttactgatgaacaaacacgttggataaatttgagattgttgaagatgaatattgttggaagac 37992295  T
Q  208 aaacaggggtttgttgtaatgaaaatggatgagagaaagtatgttgatttcagttttgattctaattttgtaagtgaggaaggtgatgaataatcatgtg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37992296 aaacaggggtttgttgtaatgaaaatggatgagagaaagtatgctggtttcagttttgattctaattttgtaagtgaggaaggtgatgaataatcatgtg 37992395  T
Q  308 tatatgatgaaggaggaagaggaaggatgttatggagaggttggtggtggtgtgcgatgcnnnnnnnnnnnnnnnnnnngagtgaaggttttgagaagat 407  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||    
T  37992396 tagatgatgaaggaggaagaggaaggatgttatggagaggttggtggtggtgtgcgatgc----------agagaagaggagtgaaggttttgagaagat 37992485  T
Q  408 gacatcagg-gnnnnnnnngtcctttcatgtttgtctaaggggtatttttgtcttttcccaacggtctgagaagagaaggggtaaattgctgacgtggca 506  Q
    |||||||||          |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37992486 gacatcaggttttttttttgtcctttcgtgtttgtctaaggggtatttttgtcttttcccaacggtctgagaagagaaggggtaaattgctgatgtggca 37992585  T
Q  507 gtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37992586 gtgattaacaaggatgagggacgaaattttaaacgatta 37992624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 539
Target Start/End: Complemental strand, 22869745 - 22869703
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaa 539  Q
    |||||||||||||||||||  ||| ||||||||||||||||||    
T  22869745 tgacgtggcagtgattaaccgggaagagggacgaaattttaaa 22869703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 20857072 - 20857024
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||||  ||| |||||||||||||| ||| |||||    
T  20857072 tgacgtggcagtgattaaccgggaagagggacgaaatttcaaatgatta 20857024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 37139667 - 37139771
Alignment:
Q  10 ttcttcacaacaacaggtagaagacgtaaaaaatgaaactttagcatttccagttagtttcaccatgggttttgctatgaaaaggaaaagtatgaaatgg 109  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||| | |||    
T  37139667 ttctttacaacaacaggtagaagacataaaaaatggaactttagcatttccagttagtttcaccaggggttttggcatgaaaaggaaaagtatggagtgg 37139766  T
Q  110 ttgag 114  Q
    |||||    
T  37139767 ttgag 37139771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 11761980 - 11761932
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    ||||||||||||||||||||  ||||||| ||||||||||||| |||||    
T  11761980 tgacgtggcagtgattaacagtgatgaggtacgaaattttaaatgatta 11761932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 497 - 545
Target Start/End: Original strand, 5457195 - 5457243
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||||  |||||||||||||||||||||| |||||    
T  5457195 tgacgtggcagtgattaactgggatgagggacgaaattttaaatgatta 5457243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 18855782 - 18855850
Alignment:
Q  286 gaaggtgatgaataatcatgtgtatatgatgaaggaggaagaggaaggatgttatggagaggttggtggtggtgt 360  Q
    ||||||||||||||||||||  || ||||||||||||||||      || |||||||||||||||||||||||||    
T  18855782 gaaggtgatgaataatcatgattagatgatgaaggaggaag------gaggttatggagaggttggtggtggtgt 18855850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 497 - 545
Target Start/End: Original strand, 12644093 - 12644141
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||||  ||| |||||||||||||||||| |||||    
T  12644093 tgacgtggcagtgattaaccgggaagagggacgaaattttaaatgatta 12644141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 4226265 - 4226217
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||||  ||| || ||||||||||||||| |||||    
T  4226265 tgacgtggcagtgattaaccgggaagaaggacgaaattttaaatgatta 4226217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Original strand, 43124440 - 43124488
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||||  |||  ||||||||||||||||| |||||    
T  43124440 tgacgtggcagtgattaactgggaatagggacgaaattttaaatgatta 43124488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 45914664 - 45914616
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    ||||||||||||||||||   ||| |||||||||||||||||| |||||    
T  45914664 tgacgtggcagtgattaatcgggaagagggacgaaattttaaatgatta 45914616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 26463319 - 26463271
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||||  |||||||||||||||||||||| |||||    
T  26463319 tgacgtggcagtgattaactgggatgagggacgaaattttaaatgatta 26463271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 31197200 - 31197152
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  31197200 tgacgtggcagtgattaactaggatgagggatgaaattttaaatgatta 31197152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 495 - 545
Target Start/End: Original strand, 42534301 - 42534351
Alignment:
Q  495 gctgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    ||||||||||| |||||||||  ||||| |||||||||||||||| |||||    
T  42534301 gctgacgtggccgtgattaactgggatgtgggacgaaattttaaatgatta 42534351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 4960680 - 4960632
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    ||||||||||||||||||   ||| |||||||||||||||||| |||||    
T  4960680 tgacgtggcagtgattaagtgggaagagggacgaaattttaaatgatta 4960632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 13295275 - 13295227
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||||  ||| ||||||||| |||||||| |||||    
T  13295275 tgacgtggcagtgattaaccgggaagagggacgacattttaaatgatta 13295227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Original strand, 17662138 - 17662186
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    ||||||||||||||||||   ||| |||||||||||||||||| |||||    
T  17662138 tgacgtggcagtgattaagtgggaagagggacgaaattttaaatgatta 17662186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 34849151 - 34849103
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||| | ||  |||||||||||||||||| |||||    
T  34849151 tgacgtggcagtgattaagaggggagagggacgaaattttaaatgatta 34849103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 545
Target Start/End: Complemental strand, 11347613 - 11347515
Alignment:
Q  448 ggtatttttgtcttttcc-caacggtctgagaagagaaggggtaaattgctgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||| | ||| ||||||||||||| || ||||||||   ||||||||| |||||||  |||  ||| |||||||||||||| |||||    
T  11347613 ggtatttttgtctttttctcaatggtctgagaagaggagaggtaaattagcgacgtggcactgattaattagggagagagacgaaattttaaatgatta 11347515  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 359
Target Start/End: Original strand, 39936375 - 39936442
Alignment:
Q  286 gaaggtgatgaataatcatgtgtatatgatgaaggaggaagaggaaggatgttatggagaggttggtggtggtg 359  Q
    |||||||||||||||||||| |||  |||||||||||||||      || ||||||||||||||||||||||||    
T  39936375 gaaggtgatgaataatcatgagtagttgatgaaggaggaag------gaggttatggagaggttggtggtggtg 39936442  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 545
Target Start/End: Original strand, 44045288 - 44045338
Alignment:
Q  495 gctgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||||||  ||||||||||| |||||||||| |||||    
T  44045288 gctgacgtggcagtgattaactgggatgagggacaaaattttaaatgatta 44045338  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Original strand, 3653368 - 3653416
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||| ||||||||||  ||| |||||||||||||||||| |||||    
T  3653368 tgacgtggtagtgattaacttggaagagggacgaaattttaaatgatta 3653416  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 25623428 - 25623380
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||||  ||  |||||||||||||||||| |||||    
T  25623428 tgacgtggcagtgattaaccgggtagagggacgaaattttaaatgatta 25623380  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 56014865 - 56014817
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||||   ||||||||||||||||||||| |||||    
T  56014865 tgacgtggcagtgattaactgtgatgagggacgaaattttaaatgatta 56014817  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 1178293 - 1178225
Alignment:
Q  286 gaaggtgatgaataatcatgtgtatatgatgaaggaggaagaggaaggatgttatggagaggttggtggtggtgt 360  Q
    |||||||||| ||||||||| ||| ||||||||||||      |||||| |||| ||||||||||||||||||||    
T  1178293 gaaggtgatggataatcatgagtagatgatgaaggag------gaaggaggttagggagaggttggtggtggtgt 1178225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 24349814 - 24349766
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||||  ||  |||||||||||||||||| |||||    
T  24349814 tgacgtggcagtgattaactggggagagggacgaaattttaaatgatta 24349766  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 41582587 - 41582539
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||| ||||||||   ||||||||||||||||||||| |||||    
T  41582587 tgacgtggcaatgattaactgtgatgagggacgaaattttaaatgatta 41582539  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Complemental strand, 54434329 - 54434281
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||||  |||||| ||||| ||||||||| |||||    
T  54434329 tgacgtggcagtgattaactgggatgaaggacgtaattttaaatgatta 54434281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Original strand, 55867402 - 55867450
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||||  |||  ||||||||||||||||| |||||    
T  55867402 tgacgtggcagtgattaactgggaatagggacgaaattttaaatgatta 55867450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 545
Target Start/End: Original strand, 56015935 - 56015983
Alignment:
Q  497 tgacgtggcagtgattaacaaggatgagggacgaaattttaaacgatta 545  Q
    |||||||||||||||||||   ||||| ||||||||||||||| |||||    
T  56015935 tgacgtggcagtgattaactgtgatgaaggacgaaattttaaatgatta 56015983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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