View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9320-LTR4-TNT-insertion-1 (Length: 173)
Name: F9320-LTR4-TNT-insertion-1
Description: F9320-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9320-LTR4-TNT-insertion-1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 31013409 - 31013254
Alignment:
| Q |
8 |
gattttgaacccagatgaaaggaaagagtagaggattgcactgtggttttaaataaggacaaactgctggctaatttgaaacaaatctctccactattat |
107 |
Q |
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| T |
31013409 |
gattttgaacccagatgaaaggaaagagtagaggattgcactgtggttttaaataaggacaaactgctggctaatttgaaacaaatctctccactattat |
31013310 |
T |
|
| Q |
108 |
aaaaaccgattgttttattccttcaacaaatataaactagacccgtattattatta |
163 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31013309 |
aaaaaccgattgttttattccttcaacaaatataaactagacccgtattattatta |
31013254 |
T |
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