View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9320-LTR4-TNT-insertion-3 (Length: 692)
Name: F9320-LTR4-TNT-insertion-3
Description: F9320-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9320-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 9 - 511
Target Start/End: Original strand, 41045727 - 41046229
Alignment:
| Q |
9 |
atagcaggacaactacatagcagaaacaaaccgaaaaaaccagaatcagttgtggacgtgaacaccactaaacaacactgaacctggaaannnnnnngat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41045727 |
atagcaggacaactacatagcagaaacaaaccgaaaaaaccagaatcagttgtggacgtgaacaccactaaacaacactgaacctggaaatttttttgat |
41045826 |
T |
|
| Q |
109 |
accaagatcataagcatcccttctactatggacctgtcaacaaaaggggactaacaaaactacttgcatcggatatttgaggaagcaatcaaaatttatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41045827 |
accaagatcataagcatcccttctactatggacctgtcaacaaaaggggactaacaaaactacttgcatcggatatttgaggaagcaatcaaaatttatg |
41045926 |
T |
|
| Q |
209 |
gatctttgtgatagagaaagacactagtatgcagcaattaaatgtagagcatacgttgaaatttcaccactataagatgtaacatctagtttatatgaaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41045927 |
gatctttgtgatagagaaagacactagtatgcagcaattaaatgtagagcatacgttgaaatttcaccactataagatgtaacatctagtttatatgaaa |
41046026 |
T |
|
| Q |
309 |
ttttaatttttaaccattacaaaagttagcatctaatttttatataccagtggacaaattctacaacataaaactgtcatgaagcatgaaagcttatgaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41046027 |
ttttaatttttaaccattacaaaagttagcatctaatttttatataccagtggacaaattctacaacataaaactgtcatgaagcatgaaagcttatgaa |
41046126 |
T |
|
| Q |
409 |
tgatttcatatcttatgggtcaaattccatgtataaaacaaatacattctagtaaagtaacttaaatccatactattgagcaataattcatatgttctgc |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41046127 |
tgatttcatatcttatgggtcaaattccatgtataaaacaaatacattctagtaaagtaacttaaatccatactattgagcaataattcatatgttctgc |
41046226 |
T |
|
| Q |
509 |
aca |
511 |
Q |
| |
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||| |
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| T |
41046227 |
aca |
41046229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 546 - 682
Target Start/End: Original strand, 41046264 - 41046400
Alignment:
| Q |
546 |
taaagtgttatctaggtgtattttgtcattcaaagcagttcaaaagttgaaaggaaattggccaaagtgagttcaattttgttgctaacaagagaaagaa |
645 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41046264 |
taaagtgttatctaggtgtattttgtcattcaaagcagttcaaaagttgaaaggaaattggccaaagtgagttcaattttgttgctaacaagagaaagaa |
41046363 |
T |
|
| Q |
646 |
aattgtgaagatgactaanacaatggatgaattatta |
682 |
Q |
| |
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|||||||||||||||||| |||||||||||| ||||| |
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| T |
41046364 |
aattgtgaagatgactaaaacaatggatgaaatatta |
41046400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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