View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9321-LTR4-TNT-insertion-1 (Length: 593)
Name: F9321-LTR4-TNT-insertion-1
Description: F9321-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9321-LTR4-TNT-insertion-1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 9 - 584
Target Start/End: Original strand, 23963773 - 23964348
Alignment:
| Q |
9 |
caaacaccatactccccggtcaaaaatgatatttacgatacctttgcttctttaaatctcataccttgtatataaattaatnnnnnnngatatttaaaaa |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23963773 |
caaacaccatactccccggtcaaaaatgatatttacgatacctttgcttctttaaatctcataccttgtatataaattaataaaaaaagatatttaaaaa |
23963872 |
T |
|
| Q |
109 |
tcttgcaaaataatttgagaacaattctatttttgaacnnnnnnnaaataaatgagaacttattttattttacttactcaggatcaatgtaaccatgtga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23963873 |
tcttgcaaaataatttgagaacaattctatttttgaactttttttaaataaatgagaacttattttattttacttactcaggatcaatgtaaccatgtga |
23963972 |
T |
|
| Q |
209 |
accagccaagcaattagttaggatatgagtgtcactgtcatttgcgaaagctctagacaatccgaagtctgaaatcttcgcacgcgtgttttcatcaagc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23963973 |
accagccaagcaattagttaggatatgagtgtcactgtcatttgcgaaagctctagacaatccgaagtctgaaatcttcgcacgcgtgttttcatcaagc |
23964072 |
T |
|
| Q |
309 |
aagatgttaggaggtttcaaatctctgtgaattatagctggcttgcatccattatgaagatacaccaaacctgtatttccaataaatatcagtcgcatat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23964073 |
aagatgttaggaggtttcaaatctctgtgaattatagctggcttgcatccattatgaagatacaccaaacctgtatttccaataaatatcagtcgcatat |
23964172 |
T |
|
| Q |
409 |
agttatgattaatttggccttaatttggttacatcataaagaaaacaaatataaaaggatggacatggttgaaattagttgcataccatttgctacatca |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23964173 |
agttatgattaatttggccttaatttggttacatcataaagaaaacaaatataaaaggatggacatggttgaaattagttgcataccatttgctacatca |
23964272 |
T |
|
| Q |
509 |
aatgcaatttgaagtctctcactccattccaaaacgtctgggtttttatctgccaaagtttatatttatgcaattg |
584 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23964273 |
aatgcaatttgaagtctctcactccattccaaaacgtctgggtttttatctgccaaagtttatatttatgcaattg |
23964348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 584
Target Start/End: Complemental strand, 24001010 - 24000439
Alignment:
| Q |
9 |
caaacaccatactccccggtcaaaaatgatatttacgatacctttgcttctttaaatctcataccttgtatataaatt-aatnnnnnnngatatttaaaa |
107 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||| ||| || |||||||||||||||||||||||| |||||||| ||| | | |||||| |
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| T |
24001010 |
caaacaccatactcctcggtcaaaaaagagatttacaatagctctgcttctttaaatctcataccttgattataaatttaataaaaaa--aaaattaaaa |
24000913 |
T |
|
| Q |
108 |
atcttgcaaaataatttgagaacaattctatttttgaacnnnnnnnaaa--------taaatgagaacttattttattttacttactcaggatcaatgta |
199 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24000912 |
atcttgcaaaataatttgagaacaatgctatttttgaacttttagtaaacattataataaatgagaacttattttattttacttactcaggatcaatgta |
24000813 |
T |
|
| Q |
200 |
accatgtgaaccagccaagcaattagttaggatatgagtgtcactgtcatttgcgaaagctctagacaatccgaagtctgaaatcttcgcacgcgtgttt |
299 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24000812 |
accatgtgaaccagcaaagcaattagttaggatatgagtgtcactgtcatttgcgaaagctctagacaatccgaagtctgaaatctttgcacgcgtgttt |
24000713 |
T |
|
| Q |
300 |
tcatcaagcaagatgttaggaggtttcaaatctctgtgaattatagctggcttgcatccattatgaagatacaccaaacctgtatttccaataaatatca |
399 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| |
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|
| T |
24000712 |
tcatctagcaagatgttaggaggtttcaaatctctgtggattatagctggcttgcatccattatgcagatactctaaacctgtatttccaataaatatca |
24000613 |
T |
|
| Q |
400 |
gtcgcatatagttatgattaatttggccttaatttggttacatcataaagaaaacaaatataaaaggatggacatggttgaaattagttgcataccattt |
499 |
Q |
| |
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||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24000612 |
gtcgcatatagttatga-----------ataatttggttacttcagaaagaaaacaaatataaaaggatggacatggttgaaataagttgcataccattt |
24000524 |
T |
|
| Q |
500 |
gctacatcaaatgcaatttgaagtctctcactccattccaaaacgtctgggtttttatctgccaaagtttatatttatgcaattg |
584 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
24000523 |
gctacatcaaatgcaatttgaagtctctcattccattccaaaacatttgggtttttatctgccaaagtttatagttatgcaattg |
24000439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 370
Target Start/End: Original strand, 4773217 - 4773306
Alignment:
| Q |
281 |
aatcttcgcacgcgtgttttcatcaagcaagatgttaggaggtttcaaatctctgtgaattatagctggcttgcatccattatgaagata |
370 |
Q |
| |
|
|||||| ||| || |||||||||| || || ||||| | ||||||||||||||| || || ||| ||| |||||||||||||| ||||| |
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| T |
4773217 |
aatcttggcatgcatgttttcatctagtaatatgtttgaaggtttcaaatctctatgcatagtaggtggtttgcatccattatgcagata |
4773306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 4887274 - 4887334
Alignment:
| Q |
321 |
ggtttcaaatctctgtgaattatagctggcttgcatccattatgaagatacaccaaacctg |
381 |
Q |
| |
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||||||||||||||||| || |||| ||| || ||||||||||| |||||| |||| |||| |
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| T |
4887274 |
ggtttcaaatctctgtgcataataggtggtttacatccattatgcagatactccaatcctg |
4887334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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