View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9321-LTR4-TNT-insertion-6 (Length: 209)
Name: F9321-LTR4-TNT-insertion-6
Description: F9321-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9321-LTR4-TNT-insertion-6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 36371321 - 36371512
Alignment:
| Q |
10 |
aggtgtgttcgaatgtatataaaatcaccactaacaaccattgtgaacagatacagttcattgtttgctcatgaacttgagaagagagatgaggattggc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36371321 |
aggtgtgttcgaatgtatataaaatcaccactaacaaccattgtgaacagatacagttcattgtttgctcatgaacttgagaagagagatgaggattggc |
36371420 |
T |
|
| Q |
110 |
catcttcaggttccaaagcaggtgcatgagtctgataggagagtttatcggaaaaccaaacaatacacaaattaaaagcaataataatatta |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36371421 |
catcttcaggttccaaagcaggtgcatgagtctgataggagagtttatcggaaaaccaaacaatacacaaattaaaagcaataataatatta |
36371512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 36388047 - 36388154
Alignment:
| Q |
10 |
aggtgtgttcgaatgtatataaaatcaccactaacaaccattgtgaacagatacagttcattgtttgctcatgaacttgagaagagagatgaggattggc |
109 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| | |
|
|
| T |
36388047 |
aggtgtcttcgaatgtaaataaaatcaccactcactaccattgtgaacagatacagttcattgtttgctcctgaacttgagaagagagataaggatttgt |
36388146 |
T |
|
| Q |
110 |
catcttca |
117 |
Q |
| |
|
|||||||| |
|
|
| T |
36388147 |
catcttca |
36388154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 36388172 - 36388251
Alignment:
| Q |
119 |
gttccaaagcaggtgcatgagtctgataggagagtttatcggaaaaccaaacaatacacaaattaaaagcaataataatatta |
201 |
Q |
| |
|
||||||| |||| ||||| ||||| || ||| ||||||||||||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
36388172 |
gttccaacgcagacgcatgtgtctggtacgagtgtttatcggaaaat---acagtacacaaattaaaaccaataataatatta |
36388251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 392 times since January 2019
Visitors: 971