View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9322-LTR4-TNT-insertion-1 (Length: 535)

Name: F9322-LTR4-TNT-insertion-1
Description: F9322-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9322-LTR4-TNT-insertion-1
F9322-LTR4-TNT-insertion-1
[»] chr1 (38 HSPs)
chr1 (10-525)||(4607249-4607764)
chr1 (11-324)||(4603496-4603807)
chr1 (402-525)||(4603946-4604068)
chr1 (323-417)||(13321963-13322057)
chr1 (323-415)||(6180273-6180365)
chr1 (332-414)||(1366143-1366225)
chr1 (323-415)||(35512812-35512904)
chr1 (323-415)||(38812827-38812919)
chr1 (323-415)||(39310785-39310877)
chr1 (332-415)||(22167431-22167514)
chr1 (340-421)||(47355371-47355452)
chr1 (332-415)||(1502719-1502802)
chr1 (332-415)||(3168067-3168150)
chr1 (332-415)||(23576413-23576496)
chr1 (332-414)||(23591794-23591876)
chr1 (334-415)||(36490877-36490958)
chr1 (323-403)||(28016267-28016347)
chr1 (332-396)||(51467549-51467613)
chr1 (323-414)||(51920431-51920522)
chr1 (332-397)||(23808530-23808595)
chr1 (339-415)||(25465261-25465337)
chr1 (346-417)||(30288861-30288932)
chr1 (340-419)||(41676555-41676634)
chr1 (373-415)||(44918161-44918203)
chr1 (360-413)||(5875216-5875269)
chr1 (332-381)||(22331719-22331768)
chr1 (346-417)||(20357380-20357451)
chr1 (346-417)||(20562504-20562575)
chr1 (333-420)||(21036726-21036813)
chr1 (340-415)||(30362994-30363069)
chr1 (340-415)||(34802072-34802146)
chr1 (340-415)||(41624933-41625008)
chr1 (323-413)||(7824859-7824949)
chr1 (373-414)||(2222236-2222277)
chr1 (339-412)||(39781444-39781517)
chr1 (334-414)||(29635748-29635828)
chr1 (373-413)||(35438852-35438892)
chr1 (373-413)||(43317600-43317640)
[»] chr8 (37 HSPs)
chr8 (323-415)||(28014857-28014949)
chr8 (332-420)||(9580103-9580191)
chr8 (323-415)||(27874680-27874772)
chr8 (332-417)||(12189585-12189670)
chr8 (332-417)||(12434013-12434098)
chr8 (323-414)||(38212944-38213035)
chr8 (340-426)||(14961651-14961737)
chr8 (323-425)||(38843791-38843893)
chr8 (340-415)||(2161491-2161566)
chr8 (323-414)||(16445736-16445826)
chr8 (335-415)||(3306054-3306134)
chr8 (327-415)||(26363989-26364077)
chr8 (340-415)||(26834665-26834740)
chr8 (332-415)||(43717551-43717634)
chr8 (340-414)||(40225987-40226061)
chr8 (339-413)||(41979875-41979949)
chr8 (340-421)||(12132087-12132168)
chr8 (323-415)||(45006057-45006148)
chr8 (340-415)||(26682172-26682247)
chr8 (332-398)||(24993435-24993501)
chr8 (323-413)||(32186273-32186363)
chr8 (323-420)||(6818104-6818201)
chr8 (332-376)||(6850615-6850659)
chr8 (323-379)||(14391634-14391690)
chr8 (340-412)||(20514737-20514809)
chr8 (340-415)||(15198899-15198974)
chr8 (340-415)||(31812217-31812292)
chr8 (333-415)||(5573383-5573465)
chr8 (346-420)||(10129213-10129287)
chr8 (354-407)||(6945225-6945278)
chr8 (346-415)||(29642713-29642782)
chr8 (323-376)||(30136868-30136921)
chr8 (334-398)||(297193-297257)
chr8 (346-422)||(7140451-7140527)
chr8 (373-425)||(18567405-18567457)
chr8 (373-413)||(34107171-34107211)
chr8 (340-412)||(44091422-44091494)
[»] chr7 (27 HSPs)
chr7 (323-415)||(4969860-4969952)
chr7 (332-414)||(29398134-29398216)
chr7 (323-414)||(45501546-45501637)
chr7 (339-412)||(26037196-26037269)
chr7 (332-415)||(33343084-33343167)
chr7 (332-415)||(34270357-34270440)
chr7 (332-415)||(46290106-46290189)
chr7 (340-421)||(25709392-25709473)
chr7 (323-418)||(44473508-44473603)
chr7 (322-412)||(2443906-2443996)
chr7 (340-418)||(8091308-8091386)
chr7 (332-415)||(33072077-33072160)
chr7 (340-415)||(36032542-36032617)
chr7 (339-415)||(820540-820617)
chr7 (327-414)||(26300662-26300749)
chr7 (332-397)||(47707901-47707966)
chr7 (339-415)||(8561557-8561632)
chr7 (340-412)||(28323239-28323311)
chr7 (355-414)||(29692540-29692599)
chr7 (373-415)||(32117951-32117993)
chr7 (354-419)||(2341867-2341932)
chr7 (373-414)||(8595034-8595075)
chr7 (346-415)||(23982754-23982823)
chr7 (348-413)||(26050462-26050527)
chr7 (348-413)||(26059821-26059886)
chr7 (367-415)||(39757109-39757157)
chr7 (340-412)||(41331458-41331530)
[»] chr6 (21 HSPs)
chr6 (323-415)||(34692441-34692533)
chr6 (332-415)||(14228125-14228208)
chr6 (332-415)||(17552586-17552669)
chr6 (332-415)||(28943768-28943851)
chr6 (332-414)||(4371936-4372017)
chr6 (327-414)||(30591163-30591250)
chr6 (323-390)||(30623413-30623480)
chr6 (345-415)||(3261187-3261257)
chr6 (332-415)||(33017820-33017903)
chr6 (373-417)||(32614941-32614985)
chr6 (368-415)||(2830680-2830727)
chr6 (346-413)||(31069583-31069650)
chr6 (340-414)||(3484697-3484771)
chr6 (373-415)||(3853080-3853122)
chr6 (332-414)||(24979149-24979231)
chr6 (373-414)||(27819627-27819668)
chr6 (349-418)||(29065421-29065490)
chr6 (349-418)||(29120274-29120343)
chr6 (367-416)||(29863300-29863349)
chr6 (346-414)||(10887139-10887207)
chr6 (332-415)||(32804709-32804794)
[»] chr5 (19 HSPs)
chr5 (323-415)||(3398307-3398399)
chr5 (332-422)||(30839877-30839967)
chr5 (332-415)||(36597675-36597758)
chr5 (323-415)||(18841704-18841796)
chr5 (332-415)||(6863652-6863735)
chr5 (332-414)||(23995416-23995498)
chr5 (323-397)||(39043240-39043314)
chr5 (346-414)||(32019984-32020052)
chr5 (355-407)||(42319052-42319104)
chr5 (354-424)||(40980491-40980561)
chr5 (332-384)||(16883640-16883692)
chr5 (351-411)||(40513066-40513126)
chr5 (332-415)||(26376515-26376597)
chr5 (373-430)||(4047549-4047607)
chr5 (340-414)||(15837379-15837453)
chr5 (332-406)||(36474637-36474711)
chr5 (346-415)||(2795633-2795702)
chr5 (340-413)||(15820330-15820403)
chr5 (351-415)||(42239568-42239631)
[»] chr2 (30 HSPs)
chr2 (323-415)||(4576325-4576417)
chr2 (332-415)||(7757785-7757868)
chr2 (334-415)||(8065221-8065302)
chr2 (332-415)||(29142170-29142253)
chr2 (332-415)||(38248419-38248502)
chr2 (340-417)||(26003343-26003420)
chr2 (332-421)||(29157822-29157911)
chr2 (332-412)||(41771145-41771225)
chr2 (323-415)||(43806447-43806539)
chr2 (332-415)||(5583557-5583640)
chr2 (340-415)||(9747421-9747496)
chr2 (332-415)||(24729576-24729659)
chr2 (332-414)||(7720211-7720293)
chr2 (340-414)||(5853463-5853537)
chr2 (340-414)||(16493532-16493606)
chr2 (340-413)||(34213950-34214023)
chr2 (373-413)||(19183491-19183531)
chr2 (334-397)||(17234955-17235018)
chr2 (323-414)||(23932652-23932743)
chr2 (340-414)||(22704641-22704715)
chr2 (323-385)||(26129135-26129197)
chr2 (346-424)||(36731290-36731368)
chr2 (346-414)||(20566017-20566085)
chr2 (323-387)||(36612758-36612822)
chr2 (323-387)||(36620609-36620673)
chr2 (346-421)||(9450367-9450442)
chr2 (340-403)||(25948143-25948206)
chr2 (346-415)||(35729227-35729296)
chr2 (367-415)||(17265535-17265583)
chr2 (339-415)||(25998001-25998077)
[»] chr4 (28 HSPs)
chr4 (332-415)||(18882266-18882349)
chr4 (323-426)||(19450888-19450991)
chr4 (323-420)||(27019347-27019444)
chr4 (323-413)||(52391385-52391475)
chr4 (323-424)||(19468281-19468382)
chr4 (323-411)||(24684924-24685012)
chr4 (332-415)||(17409920-17410003)
chr4 (323-415)||(44916642-44916734)
chr4 (332-415)||(9759141-9759224)
chr4 (323-414)||(23545563-23545654)
chr4 (332-415)||(50352398-50352481)
chr4 (345-421)||(27756670-27756746)
chr4 (334-415)||(34941376-34941457)
chr4 (348-421)||(40049670-40049743)
chr4 (335-415)||(39876929-39877009)
chr4 (323-414)||(19838691-19838782)
chr4 (340-414)||(4779436-4779510)
chr4 (332-376)||(3085741-3085785)
chr4 (323-415)||(33632202-33632293)
chr4 (340-415)||(51691445-51691520)
chr4 (332-417)||(16069204-16069289)
chr4 (339-412)||(37432868-37432941)
chr4 (346-418)||(29190812-29190884)
chr4 (340-415)||(49181176-49181251)
chr4 (346-413)||(49250336-49250403)
chr4 (323-385)||(24242917-24242979)
chr4 (340-414)||(36971378-36971452)
chr4 (340-412)||(42479894-42479966)
[»] chr3 (27 HSPs)
chr3 (334-425)||(2566580-2566671)
chr3 (332-415)||(51401536-51401619)
chr3 (323-420)||(50204490-50204587)
chr3 (323-413)||(54527707-54527797)
chr3 (332-413)||(8165742-8165823)
chr3 (332-422)||(10307862-10307952)
chr3 (323-413)||(42180139-42180229)
chr3 (332-415)||(2571364-2571447)
chr3 (332-426)||(31318737-31318831)
chr3 (323-413)||(51567821-51567908)
chr3 (332-415)||(45983602-45983685)
chr3 (323-411)||(23803049-23803137)
chr3 (323-414)||(38785967-38786058)
chr3 (332-415)||(51618143-51618226)
chr3 (340-414)||(33474473-33474547)
chr3 (332-414)||(46492343-46492425)
chr3 (323-387)||(26499657-26499720)
chr3 (334-414)||(35414809-35414889)
chr3 (355-419)||(40930170-40930234)
chr3 (332-415)||(12515473-12515556)
chr3 (340-414)||(15269160-15269234)
chr3 (340-420)||(23523050-23523130)
chr3 (340-415)||(36426408-36426483)
chr3 (340-415)||(38389551-38389626)
chr3 (351-397)||(38277448-38277494)
chr3 (340-413)||(1569191-1569264)
chr3 (381-413)||(1746250-1746282)
[»] scaffold0229 (1 HSPs)
scaffold0229 (332-414)||(24527-24609)
[»] scaffold0074 (1 HSPs)
scaffold0074 (340-414)||(45497-45571)
[»] scaffold0036 (1 HSPs)
scaffold0036 (332-414)||(94018-94100)
[»] scaffold0129 (1 HSPs)
scaffold0129 (323-376)||(13696-13749)
[»] scaffold0011 (1 HSPs)
scaffold0011 (367-418)||(13216-13267)
[»] scaffold0111 (1 HSPs)
scaffold0111 (348-414)||(41094-41160)
[»] scaffold0149 (1 HSPs)
scaffold0149 (348-413)||(22576-22641)
[»] scaffold0061 (1 HSPs)
scaffold0061 (346-415)||(52778-52847)
[»] scaffold0017 (1 HSPs)
scaffold0017 (346-415)||(145787-145856)
[»] scaffold0618 (1 HSPs)
scaffold0618 (340-412)||(8416-8488)
[»] scaffold0006 (1 HSPs)
scaffold0006 (381-417)||(158969-159005)


Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 10 - 525
Target Start/End: Original strand, 4607249 - 4607764
Alignment:
Q  10 gaaattgtctcattgaagctctctttgtttgctcggcgctttttgaataacaagttttcaacaaaggagatattacttaaacgtgatattttaaacattg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4607249 gaaattgtctcattgaagctctctttgtttgctcggcgctttttgaataacaagttttcaacaaaggagatattacttaaacgtgatattttaaacattg 4607348  T
Q  110 attctcaattttgtgtgaatggttgtgaagtggccgaatcgattgaccacttattctttgaatgtcctttgtttagataattgtggttcaatgtcctctc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4607349 attctcaattttgtgtgaatggttgtgaagtggccgaatcgattgaccacttattctttgaatgtcctttgtttagataattgtggttcaatgtcctctc 4607448  T
Q  210 tcgattaggaatttattgtgctttatcaaactagacaccatgtcactaccnnnnnnnnnctagacaccatgttcgtcaatttggtgtcttgtttttatct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||| ||||||||||||    
T  4607449 tcgattaggaatttattgtgctttatcaaactagacaccatgtcactaccaaaaaaaaactagacaccatgttcgtcaatttggtgttttgtttttatct 4607548  T
Q  310 agtcatgtgtcgtgttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgataga 409  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4607549 agtcatgtgtcgtgttttacacttaatattaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgataga 4607648  T
Q  410 aaaaccttttttataatccctgtcacactgaatcatcggtaattgaggacataaaacttttgtttgtgtggttatctaaaatctcatgtgaaagcctttg 509  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4607649 aaaaccttttttataatccctgtcacattgaatcatcggtaattgaggacataaaacttttgtttgtgtggttatctaaaatctcatgtgaaagcctttg 4607748  T
Q  510 actttaaatttcatta 525  Q
    ||||||||||||||||    
T  4607749 actttaaatttcatta 4607764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 4603496 - 4603807
Alignment:
Q  11 aaattgtctcattgaagctctctttgtttgctcggcgctttttgaataacaagttttcaacaaaggagatattacttaaacgtgatattttaaacattga 110  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||    |||||| ||||||||||||||| ||||    
T  4603496 aaattgtctcagtgaagctctctttgtttgtttggcgctttttgaataacaagtttccaacaaaggaga---cacttaagcgtgatattttaaacgttga 4603592  T
Q  111 ttctcaattttgtgtgaatggttgtgaagtggccgaatcgattgaccacttattctttgaatgtcctttgtttagataattgtggttcaatgtcctctct 210  Q
    ||||||||||||||||||||||||||||||| |||| | || |  |  |||||||||| |||||||||||||| || || |||||||| ||||||| |||    
T  4603593 ttctcaattttgtgtgaatggttgtgaagtgaccgatttgactagctgcttattctttaaatgtcctttgtttggacaactgtggttcgatgtcctatct 4603692  T
Q  211 cgattaggaatttattgtgctttatcaaactagacaccatgtcactacc-nnnnnnnnnctagacaccatgttcgtcaatttggtgtcttgtttttatct 309  Q
    | ||||| |||||||||||||||||||||||||| ||||||||||  ||          ||||||||||||||| ||||||||| || ||||||||||||    
T  4603693 caattagaaatttattgtgctttatcaaactagagaccatgtcaccgccaaaaaaaaaactagacaccatgttcatcaatttggcgttttgtttttatct 4603792  T
Q  310 agtcatgtgtcgtgt 324  Q
     | ||||||||||||    
T  4603793 ggccatgtgtcgtgt 4603807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 402 - 525
Target Start/End: Original strand, 4603946 - 4604068
Alignment:
Q  402 atgatagaaaaaccttttttataatccctgtcacactgaatcatcggtaattgaggacataaaacttttgtttgtgtggttatctaaaatctcatgtgaa 501  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||| ||||| ||||||||||||||||| |   || |||  |||||||||||||||||    
T  4603946 atgatagaaaaaccctttttataatccttgtcacattgaatcatcgataattaaggacataaaacttttg-tcacgtagttgactaaaatctcatgtgaa 4604044  T
Q  502 agcctttgactttaaatttcatta 525  Q
    |  |||||||||||||||||||||    
T  4604045 aaactttgactttaaatttcatta 4604068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 323 - 417
Target Start/End: Original strand, 13321963 - 13322057
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctt 417  Q
    |||||| | |||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||||||    
T  13321963 gttttatatttaatattaaatgtacaaattccaatacaaaatttctattttaaacttcttaacatatgcaaatttgcacatgatagaaaaacctt 13322057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 323 - 415
Target Start/End: Original strand, 6180273 - 6180365
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| | |||||| |||||||||||||||||||| |||||||||||| |||| |||||||||| || ||||||| ||||||||||||||||    
T  6180273 gttttatatttaatattaaatgtacaagttccaatataaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 6180365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 1366143 - 1366225
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||||||||||||| ||| ||||||||||||||| ||||| |||||||||| |||| |||||||||| |||||||||||||||    
T  1366143 ttaatactaaatgttcaaattccaatacaaaattactattttaaatttctttacatgtgtaaatttgcacatgatagaaaaac 1366225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 323 - 415
Target Start/End: Original strand, 35512812 - 35512904
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| | |||||| ||||||| |||||||||||| |||||||||||| |||| |||||||||| || ||||||| ||||||||||||||||    
T  35512812 gttttatatttaatattaaatgtgcaagttccaatataaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 35512904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 323 - 415
Target Start/End: Original strand, 38812827 - 38812919
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| | |||||| |||||||||||||| ||||| |||||||||||| | || |||||||||| || ||||||| ||||||||||||||||    
T  38812827 gttttatatttaatattaaatgtacaagtttcaatataaaatttctattttgaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 38812919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 323 - 415
Target Start/End: Complemental strand, 39310877 - 39310785
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| |||||||| |||||||  || ||||||||||||||||||||| |||| || ||||||| || ||||||| ||||||||||||||||    
T  39310877 gttttatacttaatattaaatgtgaaaattccaatacaaaatttctattttaaactttttaacatgtgcaaatttgcacatgatagaaaaacc 39310785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 22167431 - 22167514
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| |||||||||||||||||||||||| |||||||| |||| |||||| ||| || ||||||| ||||||||| ||||||    
T  22167431 ttaatattaaatgtacaagttccaatacaaagtttctattttaaacttcttatcatgtgcaaatttgcacatgataggaaaacc 22167514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 340 - 421
Target Start/End: Complemental strand, 47355452 - 47355371
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctttttt 421  Q
    ||||| ||||||||||||||||| ||  |||| ||||||||||||||| ||||||||| ||| |||||||||||| ||||||    
T  47355452 aaatgaacaagttccaatacaaatttattattttaaatttcttaacatgtgtaaatttatacgtgatagaaaaacatttttt 47355371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 1502802 - 1502719
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| ||| ||||||| |||| || ||||| ||||||||||||||| || ||||||| ||||||||||||||||    
T  1502802 ttaatacaaaatgttcaaattccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 1502719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 3168150 - 3168067
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| ||||||||||||||||||||| ||| ||||||| |||| || ||||| | || ||||||| ||||||||||||||||    
T  3168150 ttaatattaaatgtacaagttccaatactaaaattctattttaaactttttaacgtgtgcaaatttgcacatgatagaaaaacc 3168067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 23576496 - 23576413
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| |||||| |||| |||| || ||||| ||||||||||||||| || ||||||| ||||||||||||||||    
T  23576496 ttaatacaaaatgttcaagtttcaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 23576413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 23591794 - 23591876
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||||| |||||||||||||||||| |||| ||  ||||  |||||||||||||| || ||||||| |||||||||||||||    
T  23591794 ttaatacaaaatgtacaagttccaatgcaaagttgttatttaaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 23591876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 36490877 - 36490958
Alignment:
Q  334 aatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||| |||||||||||||||||| |||| || ||||| |||| |||||||||| || |||||||  |||||||||||||||    
T  36490877 aatacaaaatgtacaagttccaatgcaaagttactattttaaacttcttaacatgtgcaaatttgctcatgatagaaaaacc 36490958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 28016267 - 28016347
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacat 403  Q
    |||||| | |||||| |||| ||||||||||||||||||||||| |||| |||| |||||||||| || ||||||| ||||    
T  28016267 gttttatatttaatattaaaagtacaagttccaatacaaaatttatattttaaaattcttaacatgtgcaaatttgcacat 28016347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 332 - 396
Target Start/End: Original strand, 51467549 - 51467613
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatt 396  Q
    |||||| |||||||||||||||||||||||| || ||||| ||||||||||||||| | ||||||    
T  51467549 ttaatattaaatgtacaagttccaatacaaacttcctattttaaatttcttaacatgtctaaatt 51467613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 414
Target Start/End: Complemental strand, 51920522 - 51920431
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||||| | |||||| ||||| ||||| ||  |||| |||||||||||| ||||||| ||||||| || ||||||| |||||||||||||||    
T  51920522 gttttatatttaatattaaatatacaaattttaatataaaatttctattttaaatttattaacatgtgcaaatttgcacatgatagaaaaac 51920431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 397
Target Start/End: Original strand, 23808530 - 23808595
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaattt 397  Q
    |||||| |||||||| ||||||||||||||||||||||||  ||| |||||||||| || ||||||    
T  23808530 ttaatattaaatgtataagttccaatacaaaatttctatttaaaacttcttaacatgtgcaaattt 23808595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 25465261 - 25465337
Alignment:
Q  339 taaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| |||||||||||| |||| || ||||| | || |||||||||| || ||||||| ||||||||||||||||    
T  25465261 taaatgcacaagttccaatgcaaatttactattttgaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 25465337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 417
Target Start/End: Complemental strand, 30288932 - 30288861
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctt 417  Q
    |||||||||||   |||||| ||| | |||| |||||||||| |||||||||| ||||||||||||||||||    
T  30288932 acaagttccaagttaaaattactactttaaacttcttaacatgtgtaaatttgcacatgatagaaaaacctt 30288861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 419
Target Start/End: Complemental strand, 41676634 - 41676555
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctttt 419  Q
    ||||| |||||||  |||||||||||  |||| | ||||||||||||| || ||||||| |||||||||||||| |||||    
T  41676634 aaatgcacaagttttaatacaaaattattattttgaatttcttaacatgtgcaaatttgcacatgatagaaaaaactttt 41676555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 415
Target Start/End: Original strand, 44918161 - 44918203
Alignment:
Q  373 taaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||||||||||| |||||||||| ||||||||||||||||    
T  44918161 taaatttcttaacatgtgtaaatttgcacatgatagaaaaacc 44918203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 360 - 413
Target Start/End: Complemental strand, 5875269 - 5875216
Alignment:
Q  360 aaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    |||||||||||| |||| |||||||||| || ||||||| ||||||||||||||    
T  5875269 aaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaa 5875216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 22331719 - 22331768
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttct 381  Q
    |||||| ||| ||||||||||||||||||||||||||||| |||| ||||    
T  22331719 ttaatattaattgtacaagttccaatacaaaatttctattttaaacttct 22331768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 417
Target Start/End: Original strand, 20357380 - 20357451
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctt 417  Q
    |||||||| || ||||| || ||||  ||||| | ||||||| |||||||||||||||||||||| ||||||    
T  20357380 acaagttctaaaacaaacttactatcttaaatattttaacatgtgtaaatttgtacatgatagaacaacctt 20357451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 417
Target Start/End: Complemental strand, 20562575 - 20562504
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctt 417  Q
    |||||||| || ||||| || ||||  ||||| | ||||||| |||||||||||||||||||||| ||||||    
T  20562575 acaagttctaaaacaaacttactatcttaaatattttaacatgtgtaaatttgtacatgatagaacaacctt 20562504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 420
Target Start/End: Original strand, 21036726 - 21036813
Alignment:
Q  333 taatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttttt 420  Q
    ||||| ||||| |||||||| ||||| ||||||| |||| |||| || |||| || ||||||||||   |||||||||||||| ||||    
T  21036726 taatattaaatatacaagtttcaatataaaatttttattttaaagtttttaatatgtgtaaatttgatgatgatagaaaaaccctttt 21036813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 415
Target Start/End: Complemental strand, 30363069 - 30362994
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||| |||||||||||  |||| || ||||| ||||||| ||| ||| || ||||||| ||||||||||||||||    
T  30363069 aaatgcacaagttccaagtcaaagttactattttaaatttgttatcatgtgcaaatttgcacatgatagaaaaacc 30362994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 34802072 - 34802146
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||| ||||||||||  |||||||| | ||| |||| |||||||||| || ||||||| ||||||||||||||||    
T  34802072 aaatgcacaagttccag-acaaaattaccattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 34802146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 41624933 - 41625008
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||| |||||||||||  |||| || ||| | |||| |||||| |||||| ||||||| ||||||||||||||||    
T  41624933 aaatgcacaagttccaagtcaaagttactactttaaacttcttatcatatgcaaatttgcacatgatagaaaaacc 41625008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 413
Target Start/End: Complemental strand, 7824949 - 7824859
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    |||||| | |||||| ||||||||||| || || |||||||||| |||| |||| || ||||||| || ||||||||| || ||| |||||    
T  7824949 gttttatatttaatattaaatgtacaaatttcattacaaaatttttattttaaactttttaacatgtgcaaatttgtaaattataaaaaaa 7824859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 2222277 - 2222236
Alignment:
Q  373 taaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||||||||||||| |||||||||  |||||||||||||||    
T  2222277 taaatttcttaacatgtgtaaattttcacatgatagaaaaac 2222236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 412
Target Start/End: Original strand, 39781444 - 39781517
Alignment:
Q  339 taaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaa 412  Q
    ||||||||||| || ||||||||||||| ||||  ||| || ||||||| || |||| || |||||||||||||    
T  39781444 taaatgtacaaatttcaatacaaaatttttatttaaaactttttaacatgtgcaaatatgcacatgatagaaaa 39781517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 29635828 - 29635748
Alignment:
Q  334 aatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||| |||| |||||||| ||||| ||| || ||||| ||||||| ||||||| |  |||||| || |||||||||||||    
T  29635828 aatacaaaatatacaagtttcaatataaagttactattttaaattttttaacatgtacaaatttataaatgatagaaaaac 29635748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 413
Target Start/End: Original strand, 35438852 - 35438892
Alignment:
Q  373 taaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    ||||||||||||||| || ||||||| ||||||||||||||    
T  35438852 taaatttcttaacatgtgcaaatttgcacatgatagaaaaa 35438892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 413
Target Start/End: Original strand, 43317600 - 43317640
Alignment:
Q  373 taaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    |||| |||||||||| |||||||||||||||||| ||||||    
T  43317600 taaacttcttaacatgtgtaaatttgtacatgattgaaaaa 43317640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 323 - 415
Target Start/End: Complemental strand, 28014949 - 28014857
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| | |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| || ||||||| ||||||||||||||||    
T  28014949 gttttatatttaatattaaatgtacaagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 28014857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 332 - 420
Target Start/End: Complemental strand, 9580191 - 9580103
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttttt 420  Q
    |||||| |||||||||||||| |||||||||||||||||| |||| |||||||||| |||||||||| |||||||| ||||||| ||||    
T  9580191 ttaatattaaatgtacaagtttcaatacaaaatttctattttaaacttcttaacatgtgtaaatttgcacatgataaaaaaaccctttt 9580103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 323 - 415
Target Start/End: Complemental strand, 27874772 - 27874680
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| | |||||| |||||||||||||||||||||||||||| |||| |||| |||||||||| || ||||||| ||||||||||||||||    
T  27874772 gttttatatttaatattaaatgtacaagttccaatacaaaatttgtattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 27874680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 417
Target Start/End: Complemental strand, 12189670 - 12189585
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctt 417  Q
    |||||| |||||||||||||||||||| ||| |||||||| |||| |||||| ||| || ||||||| ||||||||||||||||||    
T  12189670 ttaatattaaatgtacaagttccaatataaagtttctattttaaacttcttatcatgtgcaaatttgcacatgatagaaaaacctt 12189585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 417
Target Start/End: Complemental strand, 12434098 - 12434013
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctt 417  Q
    |||||| |||||||||||||||||||| ||| |||||||| |||| |||||| ||| || ||||||| ||||||||||||||||||    
T  12434098 ttaatattaaatgtacaagttccaatataaagtttctattttaaacttcttatcatgtgcaaatttgcacatgatagaaaaacctt 12434013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 414
Target Start/End: Complemental strand, 38213035 - 38212944
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||||| | |||||| || ||||||||||| ||||| |||||||||||| |||| |||||||||| || ||||||| |||||||||||||||    
T  38213035 gttttatatttaatattacatgtacaagtttcaatataaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 38212944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 426
Target Start/End: Complemental strand, 14961737 - 14961651
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttttttataat 426  Q
    ||||| |||||||||||||||||||| ||||| |||| |||||| ||| || ||||||| |||||||||||||||| |||| |||||    
T  14961737 aaatgcacaagttccaatacaaaattactattttaaacttcttagcatgtgcaaatttgcacatgatagaaaaacccttttaataat 14961651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 425
Target Start/End: Original strand, 38843791 - 38843893
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctttttta 422  Q
    |||||| | |||||| |||||||||||||||||||| ||||||| |||| |||| |||||| ||| || ||||||  |||||||||||||||| || |||    
T  38843791 gttttatatttaatattaaatgtacaagttccaataaaaaatttatattttaaacttcttagcatgtgcaaatttacacatgatagaaaaacccttctta 38843890  T
Q  423 taa 425  Q
    |||    
T  38843891 taa 38843893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 2161491 - 2161566
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| ||||||||||| |||| || ||||| ||||||||||||||| || ||||||| ||||||||||||||||    
T  2161491 aaatgttcaagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 2161566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 323 - 414
Target Start/End: Complemental strand, 16445826 - 16445736
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||||| | |||||| |||||||||| |||||||||||||||||||||| |||| ||||||| || || ||||||| |||| ||||||||||    
T  16445826 gttttatatttaatattaaatgtaca-gttccaatacaaaatttctattttaaacttcttaatatgtgcaaatttgcacataatagaaaaac 16445736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 3306134 - 3306054
Alignment:
Q  335 atactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||| |||||| |||||| |||| |||| || ||||| ||||||||||||||| || ||||||| ||||||||||||||||    
T  3306134 atacaaaatgttcaagtttcaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 3306054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 327 - 415
Target Start/End: Complemental strand, 26364077 - 26363989
Alignment:
Q  327 tacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||| ||||||  |||||| ||||||||||| |||| || ||||| |||||||||||||||  | ||||||| ||||||||||||||||    
T  26364077 tacaattaatagaaaatgttcaagttccaatgcaaagttactattttaaatttcttaacatgcgcaaatttgcacatgatagaaaaacc 26363989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 26834665 - 26834740
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||| |||||||||||  ||||||| | ||| |||||||||||| ||||| ||||||| ||||||||||||||||    
T  26834665 aaatgcacaagttccaagtcaaaattaccattttaaatttcttaatatatgcaaatttgcacatgatagaaaaacc 26834740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 43717634 - 43717551
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||||||||| ||||||||| || |||| || || || | || |||||||||| |||||||||| ||||||||||||||||    
T  43717634 ttaatactaaatgcacaagttcccattcaaacttacttttttgaaattcttaacatgtgtaaatttgcacatgatagaaaaacc 43717551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 40226061 - 40225987
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||||| || || |||| ||||||||| |||||||| |||||||||| || ||||||| |||||||||||||||    
T  40226061 aaatgtataaatttcaatgcaaaatttcaattataaacttcttaacatgtgcaaatttgcacatgatagaaaaac 40225987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 339 - 413
Target Start/End: Complemental strand, 41979949 - 41979875
Alignment:
Q  339 taaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    ||||||| |||||| |||||||||| || |||| |||||||||||| || |||||||||| ||| ||||||||||    
T  41979949 taaatgtgcaagtttcaatacaaaaattttattttaaatttcttaatatgtgtaaatttgcacaggatagaaaaa 41979875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 421
Target Start/End: Original strand, 12132087 - 12132168
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctttttt 421  Q
    |||||| |||||||||||||||| || ||| | ||||||||||||||| || || |||| | |||||||||||||| |||||    
T  12132087 aaatgttcaagttccaatacaaacttactactttaaatttcttaacatgtgcaagtttgcagatgatagaaaaacccttttt 12132168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 415
Target Start/End: Original strand, 45006057 - 45006148
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| | |||||| || ||||||| |||||||||||||| ||||||| |||| |||||||||| || |||||||   ||||||||||||||    
T  45006057 gttttatatttaatattagatgtacatgttccaatacaaaa-ttctattttaaacttcttaacatgtgcaaatttgcttatgatagaaaaacc 45006148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 26682172 - 26682247
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||| |||||||||||  |||| || ||| | ||||||||||||||| || ||||||| ||||||||||||||||    
T  26682172 aaatgcacaagttccaagtcaaagttactactttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 26682247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 24993435 - 24993501
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttg 398  Q
    |||||| | ||||||||| ||| |||||||||||| |||| ||||||||||||||| || |||||||    
T  24993435 ttaatattcaatgtacaaattctaatacaaaatttttattttaaatttcttaacatgtgcaaatttg 24993501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 413
Target Start/End: Original strand, 32186273 - 32186363
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    |||||| | |||||| |||||||  || || ||||| |||||||||||| |||| || |||||||||| ||||||| ||| ||||||||||    
T  32186273 gttttatatttaatattaaatgtgtaaatttcaatataaaatttctattttaaacttattaacatatgcaaatttgcacacgatagaaaaa 32186363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 6818104 - 6818201
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttttt 420  Q
    |||||| | ||||||  ||||| ||||||||| ||||||  || ||||| |||| |||||||||| |  ||||||| |||||||||||||||| ||||    
T  6818104 gttttatagttaatataaaatgcacaagttccgatacaattttactattttaaacttcttaacatgtacaaatttgcacatgatagaaaaaccctttt 6818201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 6850659 - 6850615
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaa 376  Q
    |||||| ||||||||||||||| |||||||| |||||||||||||    
T  6850659 ttaatattaaatgtacaagttcaaatacaaattttctattataaa 6850615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 14391690 - 14391634
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaattt 379  Q
    |||||| |||||||| |||||||  ||||||||||||||||||| |||| |||||||    
T  14391690 gttttatacttaatattaaatgtgtaagttccaatacaaaatttatattttaaattt 14391634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 20514737 - 20514809
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaa 412  Q
    ||||||||||||||||| ||||| || | ||| ||||||||||||| | || |||| || |||||||||||||    
T  20514737 aaatgtacaagttccaagacaaacttaccattttaaatttcttaacctgtgcaaatatgcacatgatagaaaa 20514809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 415
Target Start/End: Complemental strand, 15198974 - 15198899
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||| |||||||| |||| |||| || |||||  |||||| ||||||| || ||||||| ||||||||||||||||    
T  15198974 aaatatacaagttacaatgcaaagttactatttaaaattttttaacatgtgcaaatttgcacatgatagaaaaacc 15198899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 31812217 - 31812292
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||| |||||||||||  ||||||| | ||| |||| ||||||| || || ||||||| ||||||||||||||||    
T  31812217 aaatgcacaagttccaagtcaaaattaccattttaaacttcttaatatgtgcaaatttgcacatgatagaaaaacc 31812292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 415
Target Start/End: Original strand, 5573383 - 5573465
Alignment:
Q  333 taatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| ||||||| |||||| ||| ||||| |  |||| |||| |||||||||| |  ||||||| ||||||||||||||||    
T  5573383 taatacaaaatgtataagttctaatgcaaaagtattattttaaacttcttaacatgtacaaatttgcacatgatagaaaaacc 5573465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 420
Target Start/End: Original strand, 10129213 - 10129287
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttttt 420  Q
    |||||||||||   |||||| ||| | |||| |||||||||| || ||||||| |||||||||||||||| ||||    
T  10129213 acaagttccaagttaaaattactactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccctttt 10129287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 6945225 - 6945278
Alignment:
Q  354 caatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgata 407  Q
    ||||||||||||| |||  |||| || |||||||||||||||||| ||||||||    
T  6945225 caatacaaaatttatatcttaaactttttaacatatgtaaatttgcacatgata 6945278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 415
Target Start/End: Original strand, 29642713 - 29642782
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| ||| ||||| || | ||| |||||| |||| |||||| ||||||| ||||||||||||||||    
T  29642713 acaagtttcaagacaaacttaccattttaaattccttatcatatgcaaatttgcacatgatagaaaaacc 29642782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 30136868 - 30136921
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaa 376  Q
    |||||| | |||||| ||||||| |||||||||||| |||||||||||| ||||    
T  30136868 gttttatatttaatattaaatgtgcaagttccaatataaaatttctattttaaa 30136921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 297193 - 297257
Alignment:
Q  334 aatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttg 398  Q
    ||||| ||||||||||||| ||||||||| ||  |||| |||| |||||||||| || |||||||    
T  297193 aatacaaaatgtacaagtttcaatacaaagttattattttaaacttcttaacatgtgcaaatttg 297257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 7140527 - 7140451
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctttttta 422  Q
    |||||||||||   |||||| ||| | |||| ||||||| || || ||||||| |||||||||||||||| ||||||    
T  7140527 acaagttccaagttaaaattactactttaaacttcttaatatgtgcaaatttgcacatgatagaaaaacccttttta 7140451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 425
Target Start/End: Complemental strand, 18567457 - 18567405
Alignment:
Q  373 taaatttcttaacatatgtaaatttgtacatgatagaaaaaccttttttataa 425  Q
    |||| |||||||||| || ||||||| |||||||||||||||| | |||||||    
T  18567457 taaacttcttaacatgtgcaaatttgcacatgatagaaaaaccctatttataa 18567405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 413
Target Start/End: Complemental strand, 34107211 - 34107171
Alignment:
Q  373 taaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    |||| ||||||||||||||||||||| | ||||||||||||    
T  34107211 taaacttcttaacatatgtaaatttgcatatgatagaaaaa 34107171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 44091422 - 44091494
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaa 412  Q
    ||||| |||||||| ||  |||| || ||| | |||||||||||||||||| ||||||  |||||||||||||    
T  44091422 aaatgcacaagttctaaatcaaagttactactttaaatttcttaacatatgcaaatttacacatgatagaaaa 44091494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 323 - 415
Target Start/End: Original strand, 4969860 - 4969952
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| | |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| || ||||||| ||||||||||||||||    
T  4969860 gttttatatttaatattaaatgtacaagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 4969952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 29398216 - 29398134
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| || ||||||| |||||||||||||||    
T  29398216 ttaatattaaatgtacaagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgaacatgatagaaaaac 29398134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 323 - 414
Target Start/End: Original strand, 45501546 - 45501637
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||||| | |||||| ||||||||||||||||||||||||||||||||| |||| ||||||| || || ||||||| |||||||||||||||    
T  45501546 gttttatatttaatattaaatgtacaagttccaatacaaaatttctattttaaacttcttaagatgtgcaaatttgcacatgatagaaaaac 45501637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 339 - 412
Target Start/End: Original strand, 26037196 - 26037269
Alignment:
Q  339 taaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaa 412  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||| || ||||||| |||||||||||||    
T  26037196 taaatgtacaagttccaatacaaaatttctattttaaacttcttaacatctgcaaatttgcacatgatagaaaa 26037269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 33343084 - 33343167
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| |||||||||||||||| || ||||| ||||||||||||||| || ||||||| ||||||||||||||||    
T  33343084 ttaatacaaaatgttcaagttccaatacaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 33343167  T

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Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 34270357 - 34270440
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| ||||||||||| |||| || ||||| ||||||||||||||| || ||||||| ||||||||||||||||    
T  34270357 ttaatacaaaatgttcaagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 34270440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 46290106 - 46290189
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| ||||||||||| |||| || ||||| ||||||||||||||| || ||||||| ||||||||||||||||    
T  46290106 ttaatacaaaatgttcaagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 46290189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 340 - 421
Target Start/End: Complemental strand, 25709473 - 25709392
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctttttt 421  Q
    ||||| ||||||||||||||||| || ||||| |||| |||||||||| || ||||||| ||||||||||||||| ||||||    
T  25709473 aaatgaacaagttccaatacaaagttactattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacttttttt 25709392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 323 - 418
Target Start/End: Complemental strand, 44473603 - 44473508
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttt 418  Q
    |||||| | |||||| ||||||| ||||||| ||||||||||||||||| |||| |||||||||| |  ||||||| |||||||| ||||| ||||    
T  44473603 gttttatatttaatattaaatgtgcaagttcaaatacaaaatttctattttaaacttcttaacatgttcaaatttgcacatgataaaaaaatcttt 44473508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 322 - 412
Target Start/End: Complemental strand, 2443996 - 2443906
Alignment:
Q  322 tgttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaa 412  Q
    |||||||  ||||||| ||||| || ||  |||||||||||||||||||| |||| |||||||||| |||||||||| | |||||||||||    
T  2443996 tgttttattcttaatattaaatatataaaatccaatacaaaatttctattttaaacttcttaacatgtgtaaatttgaatatgatagaaaa 2443906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 8091386 - 8091308
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttt 418  Q
    ||||||| ||||| |||| |||| || ||||| |||| |||||||||| |||||||||| |||||||||||||||||||    
T  8091386 aaatgtaaaagttacaatgcaaagttactattttaaacttcttaacatgtgtaaatttgcacatgatagaaaaaccttt 8091308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 33072077 - 33072160
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| ||| ||||||| |||| || ||||| ||||||||||||||| |  ||||||| ||||||||||||||||    
T  33072077 ttaatacaaaatgttcaaattccaatgcaaagttactattttaaatttcttaacatgtacaaatttgcacatgatagaaaaacc 33072160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 415
Target Start/End: Complemental strand, 36032617 - 36032542
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| ||| ||||||||||||||| |||| ||||||||||||||| || ||||||  |||| |||||||||||    
T  36032617 aaatgtataagatccaatacaaaatttttattttaaatttcttaacatgtgaaaattttcacataatagaaaaacc 36032542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 415
Target Start/End: Complemental strand, 820617 - 820540
Alignment:
Q  339 taaatgtacaagttccaatacaaaatttct-attataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| || ||||||||||||||||| | ||| |||| |||||||||| || ||||||| ||||||||||||||||    
T  820617 taaatgtgcaggttccaatacaaaattttttattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 820540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 327 - 414
Target Start/End: Original strand, 26300662 - 26300749
Alignment:
Q  327 tacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||| ||||||| |||| |||||||| |||| |||| || ||||| |||| || ||||||| || ||||||||||||||| |||||||    
T  26300662 tacatttaatacaaaatatacaagtttcaattcaaagttactattttaaactttttaacatgtgcaaatttgtacatgatggaaaaac 26300749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 332 - 397
Target Start/End: Complemental strand, 47707966 - 47707901
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaattt 397  Q
    ||||||| ||||||| ||||| |||| ||||||| ||||| |||| ||||||||||||| ||||||    
T  47707966 ttaatacaaaatgtataagtttcaattcaaaattactattttaaacttcttaacatatgaaaattt 47707901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 8561557 - 8561632
Alignment:
Q  339 taaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||||| |||||| ||||||||||||||||| ||||  ||||||||| |  ||||||| |||||||| |||||||    
T  8561557 taaatgtaaaagttcaaatacaaaatttctattttaaacgtcttaacatgt-caaatttgcacatgataaaaaaacc 8561632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 28323239 - 28323311
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaa 412  Q
    ||||||| |||||| |||| ||||||  |||| ||||||| ||||||| |||||||||  |||||||||||||    
T  28323239 aaatgtataagttctaatataaaattattattttaaattttttaacatgtgtaaatttacacatgatagaaaa 28323311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 29692599 - 29692540
Alignment:
Q  355 aatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||| ||||||||||| |||| |||||||||| |  ||||||| |||||||||||||||    
T  29692599 aataccaaatttctattttaaacttcttaacatgtacaaatttgcacatgatagaaaaac 29692540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 415
Target Start/End: Original strand, 32117951 - 32117993
Alignment:
Q  373 taaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||||||||||| || ||||||| ||||||||||||||||    
T  32117951 taaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 32117993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 419
Target Start/End: Original strand, 2341867 - 2341932
Alignment:
Q  354 caatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctttt 419  Q
    ||||||||  || ||||| ||||||| ||||||| || |||||| |||||||||||||||| ||||    
T  2341867 caatacaattttactattttaaattttttaacatgtgcaaatttatacatgatagaaaaacttttt 2341932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 414
Target Start/End: Original strand, 8595034 - 8595075
Alignment:
Q  373 taaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||| |||||||||| |||||||||| |||||||||||||||    
T  8595034 taaacttcttaacatgtgtaaatttgcacatgatagaaaaac 8595075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 23982823 - 23982754
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||||||||  |||| || ||| | ||||||||||||| | || ||||||| ||||||||||||||||    
T  23982823 acaagttccaagtcaaagttactactttaaatttcttaacgtgtgcaaatttgcacatgatagaaaaacc 23982754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 26050527 - 26050462
Alignment:
Q  348 aagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    ||||| ||| ||||| || | ||| ||||||||||||||| || ||||||| ||||||||||||||    
T  26050527 aagttacaagacaaatttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaa 26050462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 26059886 - 26059821
Alignment:
Q  348 aagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    ||||| ||| ||||| || | ||| ||||||||||||||| || ||||||| ||||||||||||||    
T  26059886 aagttacaagacaaatttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaa 26059821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 39757157 - 39757109
Alignment:
Q  367 ctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||| |||| |||||||||| || ||||||| ||||||||||||||||    
T  39757157 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 39757109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 41331530 - 41331458
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaa 412  Q
    ||||| |||||||||||  |||| || ||| | ||||||||||| ||| || ||||||| |||||||||||||    
T  41331530 aaatgcacaagttccaagtcaaagttactactttaaatttcttatcatgtgcaaatttgcacatgatagaaaa 41331458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 323 - 415
Target Start/End: Original strand, 34692441 - 34692533
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| | |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| || ||||||| ||||||||||||||||    
T  34692441 gttttatatttaatattaaatgtacaagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 34692533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 14228208 - 14228125
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| ||||||||||| |||| || ||||| ||||||||||||||| || ||||||| ||||||||||||||||    
T  14228208 ttaatacaaaatgttcaagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 14228125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 17552669 - 17552586
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| ||||||||||| || |||| ||||| ||||||||||||||| || ||||||| ||||||||||||||||    
T  17552669 ttaatacaaaatgttcaagttccaatgcataattactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 17552586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 28943851 - 28943768
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| ||||||||||| |||| || ||||| ||||||||||||||| || ||||||| ||||||||||||||||    
T  28943851 ttaatacaaaatgttcaagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 28943768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 4371936 - 4372017
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||||| ||||||| ||||||| ||||||||||||||||| |||| |||||||||| ||||||||||  ||||||||||||||    
T  4371936 ttaatattaaatgtgcaagttc-aatacaaaatttctattttaaacttcttaacatgtgtaaatttgcgcatgatagaaaaac 4372017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 414
Target Start/End: Complemental strand, 30591250 - 30591163
Alignment:
Q  327 tacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||| ||||||| |||| |||||||| |||| ||||||| | |||  ||| |||||||||| |||||||||| |||||||||||||||    
T  30591250 tacatttaatacaaaatatacaagttacaatgcaaaattaccatttaaaacttcttaacatgtgtaaatttgcacatgatagaaaaac 30591163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 390
Target Start/End: Original strand, 30623413 - 30623480
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatg 390  Q
    |||||| | ||||||  ||||||||||||| |||||||||||||||||| |||| |||||||||||||    
T  30623413 gttttatatttaatatcaaatgtacaagtttcaatacaaaatttctattttaaacttcttaacatatg 30623480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 345 - 415
Target Start/End: Original strand, 3261187 - 3261257
Alignment:
Q  345 tacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||||| ||| |||| |||||||| |||| || ||||||| |||||||||| ||||||||||||||||    
T  3261187 tacaagttctaatgcaaagtttctattttaaactttttaacatgtgtaaatttgcacatgatagaaaaacc 3261257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 33017820 - 33017903
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| |||||||| || |||| || ||||| ||||||| ||||||| || ||||||| |||| |||||||||||    
T  33017820 ttaatacaaaatgttcaagttcctatgcaaagttactattttaaattttttaacatgtgcaaatttgcacataatagaaaaacc 33017903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 32614985 - 32614941
Alignment:
Q  373 taaatttcttaacatatgtaaatttgtacatgatagaaaaacctt 417  Q
    |||| |||||||||| || ||||||||||||||||||||||||||    
T  32614985 taaacttcttaacatgtgcaaatttgtacatgatagaaaaacctt 32614941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 415
Target Start/End: Complemental strand, 2830727 - 2830680
Alignment:
Q  368 tattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||| |||| |||||||||| || ||||||||||||||||||||||||    
T  2830727 tattttaaacttcttaacatgtgcaaatttgtacatgatagaaaaacc 2830680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 31069650 - 31069583
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    |||||||||||  |||| || ||| | |||| |||||||||| |||||||||| ||||||||||||||    
T  31069650 acaagttccaagtcaaagttactaatttaaacttcttaacatgtgtaaatttgcacatgatagaaaaa 31069583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 3484771 - 3484697
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||| |||| |||||| | ||| || ||||| |||| ||||||||| |||||||| || |||||||||||||||    
T  3484771 aaatgaacaaattccaaaataaacttactattttaaacttcttaacaaatgtaaatctgcacatgatagaaaaac 3484697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 415
Target Start/End: Original strand, 3853080 - 3853122
Alignment:
Q  373 taaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||||||||||| || ||||||| ||||||||||||||||    
T  3853080 taaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 3853122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 24979231 - 24979149
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||||| ||||||| ||||| |||| | |||| || |||| ||||  ||||||||| || ||||||| |||||||||||||||    
T  24979231 ttaatattaaatgttcaagtaccaacataaaaattttattttaaacatcttaacatgtgcaaatttgcacatgatagaaaaac 24979149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 27819668 - 27819627
Alignment:
Q  373 taaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||| |||||||||| || |||||||||||||||||||||||    
T  27819668 taaacttcttaacatgtgcaaatttgtacatgatagaaaaac 27819627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 418
Target Start/End: Complemental strand, 29065490 - 29065421
Alignment:
Q  349 agttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttt 418  Q
    |||||| |||||| ||| ||||| |||| || ||||||| || || |||| |||||||||||||||||||    
T  29065490 agttccgatacaatattactattttaaactttttaacatgtgcaagtttgcacatgatagaaaaaccttt 29065421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 418
Target Start/End: Complemental strand, 29120343 - 29120274
Alignment:
Q  349 agttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttt 418  Q
    |||||| |||||| ||| ||||| |||| || ||||||| || || |||| |||||||||||||||||||    
T  29120343 agttccgatacaatattactattttaaactttttaacatgtgcaagtttgcacatgatagaaaaaccttt 29120274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 29863349 - 29863300
Alignment:
Q  367 ctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacct 416  Q
    ||||| |||| |||||||||| || ||||||| |||||||||||||||||    
T  29863349 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacct 29863300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 414
Target Start/End: Original strand, 10887139 - 10887207
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||||||||||  ||||||| | | | |||| |||||||||| || ||||||| |||||||||||||||    
T  10887139 acaagttccaaatcaaaattaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 10887207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 32804709 - 32804794
Alignment:
Q  332 ttaatactaaatgtacaag---ttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| ||||||||||||   ||||| ||| ||||||||||| ||||  ||||||||| |  ||||||| ||||||||||||||||    
T  32804709 ttaatattaaatgtacaagttcttccattacgaaatttctattttaaacatcttaacatgttcaaatttg-acatgatagaaaaacc 32804794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 323 - 415
Target Start/End: Original strand, 3398307 - 3398399
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| | |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| || ||||||| ||||||||||||||||    
T  3398307 gttttatatttaatattaaatgtacaagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 3398399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 332 - 422
Target Start/End: Original strand, 30839877 - 30839967
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctttttta 422  Q
    ||||||| |||||| ||||||||||| |||| || ||||| ||||||||||||||| || ||||||| |||||||||||||||| ||||||    
T  30839877 ttaatacaaaatgttcaagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacccttttta 30839967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 36597675 - 36597758
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| ||||||||||| |||| || ||||| ||||||||||||||| || ||||||| ||||||||||||||||    
T  36597675 ttaatacaaaatgttcaagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 36597758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 415
Target Start/End: Complemental strand, 18841796 - 18841704
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| | |||||| ||||||||||| || |||||||||||||||||| |||| || |||||||||| ||||||| ||| |||| |||||||    
T  18841796 gttttatatttaatattaaatgtacaaatttcaatacaaaatttctattttaaactttttaacatatgcaaatttgcacacgataaaaaaacc 18841704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 6863652 - 6863735
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| |||||||||||| ||| || ||||| ||||||| ||||||| || ||||||| ||||||||||||||||    
T  6863652 ttaatacaaaatgttcaagttccaatataaagttactattttaaattttttaacatgtgcaaatttgcacatgatagaaaaacc 6863735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 23995498 - 23995416
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||||| ||||||||||||| ||||| |||||| ||||| |||| |||||||||| |  ||||||| |||| ||||||||||    
T  23995498 ttaatacaaaatgtacaagtttcaatataaaattactattttaaacttcttaacatgtacaaatttgcacataatagaaaaac 23995416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 39043240 - 39043314
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaattt 397  Q
    |||||| | |||||||||||| ||||| ||| |||| |||||||||||| |||| ||||||||| ||||||||||    
T  39043240 gttttatatttaatactaaatttacaaattctaatataaaatttctattttaaacttcttaacaaatgtaaattt 39043314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 414
Target Start/End: Complemental strand, 32020052 - 32019984
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||||||||| ||||| || | ||| ||||||||||||||| || ||||||| |||||||||||||||    
T  32020052 acaagttccaagacaaacttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 32019984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 42319104 - 42319052
Alignment:
Q  355 aatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgata 407  Q
    |||||||||||| |||| ||||||| ||||||||||||||||| |||||||||    
T  42319104 aatacaaaatttttattgtaaattttttaacatatgtaaatttatacatgata 42319052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 40980491 - 40980561
Alignment:
Q  354 caatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttttttata 424  Q
    |||||||||||||||||| |||| || |||| || || ||||||| ||||||||||||||| ||| |||||    
T  40980491 caatacaaaatttctattttaaactttttaatatgtgcaaatttgcacatgatagaaaaacttttattata 40980561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 384
Target Start/End: Complemental strand, 16883692 - 16883640
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaa 384  Q
    |||||| ||||| ||||||||| ||||||||||||||||| |||| |||||||    
T  16883692 ttaatattaaatttacaagttcaaatacaaaatttctattttaaacttcttaa 16883640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 40513066 - 40513126
Alignment:
Q  351 ttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaa 411  Q
    ||||||| |||| || ||||| ||||||| ||||||| || ||||||||||||||||||||    
T  40513066 ttccaatgcaaagttactattttaaattttttaacatgtgcaaatttgtacatgatagaaa 40513126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 26376597 - 26376515
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| |||||||||||||| ||||| |||||||||||| | || || ||||||| || ||||||  |||| |||||||||||    
T  26376597 ttaatattaaatgtacaagtttcaatataaaatttctatt-tgaacttattaacatgtgcaaatttacacataatagaaaaacc 26376515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 430
Target Start/End: Original strand, 4047549 - 4047607
Alignment:
Q  373 taaatttcttaacatatgtaaatttgtacatgatagaaaaa-ccttttttataatccct 430  Q
    |||| |||||||||| || ||||||| |||||||||||||| ||||||||||| |||||    
T  4047549 taaacttcttaacatgtgcaaatttgcacatgatagaaaaacccttttttatactccct 4047607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 414
Target Start/End: Original strand, 15837379 - 15837453
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||| ||||||| ||||||||| || ||||| ||  ||||||||||  |||||||||| | |||||||||||||    
T  15837379 aaatgcacaagtttcaatacaaatttactattttagttttcttaacaagtgtaaatttggatatgatagaaaaac 15837453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 406
Target Start/End: Complemental strand, 36474711 - 36474637
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgat 406  Q
    |||||| ||||| |||||||| |||||||||||||||||| |||| || |||| || || || |||| |||||||    
T  36474711 ttaatattaaatatacaagtttcaatacaaaatttctattttaaactttttaatatgtgcaattttgcacatgat 36474637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 415
Target Start/End: Original strand, 2795633 - 2795702
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||||||||  |||| || ||| | |||| |||||||||| || ||||||| ||||||||||||||||    
T  2795633 acaagttccaagtcaaagttactactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 2795702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 15820330 - 15820403
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    |||||| ||| || ||||||||| || ||||| | |||||||| |||| |||||||||  ||||||||||||||    
T  15820330 aaatgttcaaatttcaatacaaatttactattttgaatttcttgacatgtgtaaatttaaacatgatagaaaaa 15820403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 42239568 - 42239631
Alignment:
Q  351 ttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||||||||| |||||||| |||| |||| |||||  | ||||||| ||||||||||||||||    
T  42239568 ttccaatacaaagtttctattttaaacttct-aacatgcgcaaatttgcacatgatagaaaaacc 42239631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 323 - 415
Target Start/End: Complemental strand, 4576417 - 4576325
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| | |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||  |||||| ||||||||||||||||    
T  4576417 gttttatatttaatattaaatgtacaagtttcaatacaaaatttctattttaaatttcttaacatatgcgaatttgcacatgatagaaaaacc 4576325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 7757868 - 7757785
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| ||||||||||| |||| || ||||| ||||||||||||||| |||||||||| ||||||||||||||||    
T  7757868 ttaatacaaaatgttcaagttccaatgcaaagttactattttaaatttcttaacatgtgtaaatttgcacatgatagaaaaacc 7757785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 8065221 - 8065302
Alignment:
Q  334 aatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||| ||||||||||| |||||||| |||||||||||| |||| |||||||||| || ||||||| ||||||||||||||||    
T  8065221 aatattaaatgtacaaattccaatataaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 8065302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 29142170 - 29142253
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| ||||||||||||||  ||||||||||||||||  |||| |||| ||||| |||||||||| ||||||||||||||||    
T  29142170 ttaatattaaatgtacaagttaaaatacaaaatttctatattaaacttctaaacatgtgtaaatttgcacatgatagaaaaacc 29142253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 38248502 - 38248419
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| |||||||||||  |||||| ||||| ||||||||||||||| || ||||||| ||||||||||||||||    
T  38248502 ttaatacaaaatgttcaagttccaatgtaaaattactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 38248419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 26003420 - 26003343
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctt 417  Q
    |||||||||| || |||||||||||||||||| |||| |||||||||| || ||||||| ||||||||||||| ||||    
T  26003420 aaatgtacaaatttcaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaccctt 26003343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 332 - 421
Target Start/End: Complemental strand, 29157911 - 29157822
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctttttt 421  Q
    ||||||| |||| ||||||||||||| |||| || |||||  |||||||||||||| || ||||||| |||||||||||||||| |||||    
T  29157911 ttaatacaaaatatacaagttccaatgcaaagttactatttaaaatttcttaacatgtgcaaatttgcacatgatagaaaaacccttttt 29157822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 412
Target Start/End: Original strand, 41771145 - 41771225
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaa 412  Q
    |||||| ||||||||||||||| |||||||||||| |||| |||||||| |||||| ||||||||||| ||| ||| ||||    
T  41771145 ttaatattaaatgtacaagttctaatacaaaatttttattttaaatttcataacatgtgtaaatttgtccataatataaaa 41771225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 415
Target Start/End: Original strand, 43806447 - 43806539
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| | |||||| |||||||||||||| |||||||||||||||||| |||| || ||||||| || ||||||  ||| ||||||||||||    
T  43806447 gttttatatttaatattaaatgtacaagtttcaatacaaaatttctattttaaactttttaacatgtgcaaatttacacacgatagaaaaacc 43806539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 5583640 - 5583557
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| ||||||||||| |||| || ||||| ||||||||||||||| || |||||||  |||||||||||||||    
T  5583640 ttaatacaaaatgttcaagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcgcatgatagaaaaacc 5583557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 9747421 - 9747496
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||| ||||||||||| |||||||| ||||| |||| |||||||||| || ||||||| ||||||||||||||||    
T  9747421 aaatgaacaagttccaagacaaaattactattttaaacttcttaacatgtgaaaatttgcacatgatagaaaaacc 9747496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 24729659 - 24729576
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||| ||||| ||||||| |||| || ||||| ||||||||||||||| || ||||||| ||||||||||||||||    
T  24729659 ttaatacaaaatatacaaattccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 24729576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 7720211 - 7720293
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||||||||| |||||| |||||||||||||||||||||  |||| || ||||||  || ||||||| |||||||||||||||    
T  7720211 ttaatactaagtgtacacgttccaatacaaaatttctatcttaaactttttaacacgtgcaaatttgcacatgatagaaaaac 7720293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 5853537 - 5853463
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||||| || || |||| ||||||||| |||||||| |||||||||| || ||||||| |||||||||||||||    
T  5853537 aaatgtataaatttcaatgcaaaatttcaattataaacttcttaacatgtgcaaatttgcacatgatagaaaaac 5853463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 16493606 - 16493532
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||||| || || |||| ||||||||| |||||||| |||||||||| || ||||||| |||||||||||||||    
T  16493606 aaatgtataaatttcaatgcaaaatttcaattataaacttcttaacatgtgcaaatttgcacatgatagaaaaac 16493532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 34214023 - 34213950
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    |||||| |||||||||||  |||||| ||||| ||||||||||||||| || ||||||| ||| ||||||||||    
T  34214023 aaatgttcaagttccaatgaaaaattactattttaaatttcttaacatgtgcaaatttgcacacgatagaaaaa 34213950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 413
Target Start/End: Original strand, 19183491 - 19183531
Alignment:
Q  373 taaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  19183491 taaacttcttaacatatgtaaatttgtacatgatagaaaaa 19183531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 17235018 - 17234955
Alignment:
Q  334 aatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaattt 397  Q
    ||||| |||| ||||| ||||||||||||||| ||||| ||||||||||||||| || ||||||    
T  17235018 aatacaaaatatacaaattccaatacaaaattactattttaaatttcttaacatgtgcaaattt 17234955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 414
Target Start/End: Original strand, 23932652 - 23932743
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||||| | ||||||  ||||| ||||||||| ||||||  || ||||| |||| ||||||| ||||| ||||||| |||||||||||||||    
T  23932652 gttttatagttaatataaaatgcacaagttccgatacaattttactattttaaacttcttaatatatgcaaatttgcacatgatagaaaaac 23932743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 414
Target Start/End: Original strand, 22704641 - 22704715
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||||| || || |||| ||||||||| |||||||| ||||||| || || ||||||| |||||||||||||||    
T  22704641 aaatgtataaatttcaatgcaaaatttcaattataaacttcttaagatgtgcaaatttgcacatgatagaaaaac 22704715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 26129197 - 26129135
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaac 385  Q
    |||||| | |||||| |||||||||||  ||||||||||||||| |||| |||||||||||||    
T  26129197 gttttatatttaatattaaatgtacaatatccaatacaaaatttttattttaaatttcttaac 26129135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 424
Target Start/End: Original strand, 36731290 - 36731368
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttttttata 424  Q
    |||||||| || ||||| || | ||| ||||||||||||||| |||||||||  |||||||||||||||| || |||||    
T  36731290 acaagttctaagacaaatttaccattttaaatttcttaacatgtgtaaatttacacatgatagaaaaacccttattata 36731368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 414
Target Start/End: Complemental strand, 20566085 - 20566017
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||||||||||||||||  |  || | |||| |||||||||| |||||||||| |||||||||||||||    
T  20566085 acaagttccaatacaaacataatactttaaacttcttaacatgtgtaaatttgcacatgatagaaaaac 20566017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 36612822 - 36612758
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacat 387  Q
    |||||| | |||||| ||||||||||||||  |||||||||||| |||| |||| ||||||||||    
T  36612822 gttttatatttaatattaaatgtacaagttttaatacaaaatttttattttaaacttcttaacat 36612758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 36620673 - 36620609
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacat 387  Q
    |||||| | |||||| ||||||||||||||  |||||||||||| |||| |||| ||||||||||    
T  36620673 gttttatatttaatattaaatgtacaagttttaatacaaaatttttattttaaacttcttaacat 36620609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 421
Target Start/End: Original strand, 9450367 - 9450442
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctttttt 421  Q
    |||| ||||||||||||  | ||| | ||||||||||||||| || | ||||| |||||||||||||||| |||||    
T  9450367 acaaattccaatacaaacatactactttaaatttcttaacatgtgcagatttgcacatgatagaaaaacccttttt 9450442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 403
Target Start/End: Original strand, 25948143 - 25948206
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacat 403  Q
    ||||||| || || |||| ||||||||| ||||||||||||||||||| || ||||||| ||||    
T  25948143 aaatgtataaatttcaatgcaaaatttcaattataaatttcttaacatgtgcaaatttgcacat 25948206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 415
Target Start/End: Original strand, 35729227 - 35729296
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||||||||| ||| || ||| | |||| |||| ||||| || ||||||||||||| ||||||||||    
T  35729227 acaagttccaatataaatttgctactttaaacttctcaacatgtgcaaatttgtacatgttagaaaaacc 35729296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 17265535 - 17265583
Alignment:
Q  367 ctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||| ||||||||||||||  || ||||||| ||||||||||||||||    
T  17265535 ctattttaaatttcttaacaagtgcaaatttggacatgatagaaaaacc 17265583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 415
Target Start/End: Complemental strand, 25998077 - 25998001
Alignment:
Q  339 taaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| |||||||||||| |||||||  | || ||| ||| |||||| ||| ||||||| || |||||||||||||    
T  25998077 taaatgaacaagttccaatgcaaaattaattttttaatttttttaacacatgcaaatttgcacgtgatagaaaaacc 25998001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 18882349 - 18882266
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| || ||||||| ||||||||||||||||    
T  18882349 ttaatattaaatgtacaagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 18882266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 323 - 426
Target Start/End: Complemental strand, 19450991 - 19450888
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctttttta 422  Q
    |||||| | |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| || ||||||| |||| |||||||||||  |||||    
T  19450991 gttttatatttaatattaaatgtacaagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacataatagaaaaacccatttta 19450892  T
Q  423 taat 426  Q
    ||||    
T  19450891 taat 19450888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 27019347 - 27019444
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttttt 420  Q
    |||||| | |||||| |||||||||||||| |||||||||||||||||| |||| || |||||||||| ||||||| |||||||||||||||| ||||    
T  27019347 gttttatatttaatattaaatgtacaagtttcaatacaaaatttctattttaaactttttaacatatgcaaatttgcacatgatagaaaaaccctttt 27019444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 413
Target Start/End: Original strand, 52391385 - 52391475
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    |||||| | |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| || ||||||  ||||||||||||||    
T  52391385 gttttatatttaatattaaatgtacaagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttacacatgatagaaaaa 52391475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 323 - 424
Target Start/End: Original strand, 19468281 - 19468382
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctttttta 422  Q
    |||||| | |||||| |||||||||||||| |||||||||||||||||| |||| |||||||||| || ||||||| |||| ||||||||||| ||| ||    
T  19468281 gttttatatttaatattaaatgtacaagtttcaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacataatagaaaaaccctttata 19468380  T
Q  423 ta 424  Q
    ||    
T  19468381 ta 19468382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 323 - 411
Target Start/End: Original strand, 24684924 - 24685012
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaa 411  Q
    |||||| | |||||| ||||||||||||||||||| ||||||||||||| |||| |||||||||| || ||||||| ||||||||||||    
T  24684924 gttttatatttaatattaaatgtacaagttccaatgcaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 24685012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 17409920 - 17410003
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| |||||||||||||||||||||||| |||||||| |||| |||||| ||| || ||||||| ||||||||||||||||    
T  17409920 ttaatattaaatgtacaagttccaatacaaagtttctattttaaacttcttatcatgtgcaaatttgcacatgatagaaaaacc 17410003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 323 - 415
Target Start/End: Complemental strand, 44916734 - 44916642
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| | |||||| ||||||| ||||||| ||||||||||||||||| ||||||| |||| || || ||||||| ||||||||||||||||    
T  44916734 gttttatatttaatattaaatgtgcaagttctaatacaaaatttctattttaaattttttaatatgtgcaaatttgcacatgatagaaaaacc 44916642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 9759224 - 9759141
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| ||| ||||||| |||| || ||||| ||||||||||||||| || ||||||||||||||||||||||||    
T  9759224 ttaatacaaaatgttcaacttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgtacatgatagaaaaacc 9759141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 414
Target Start/End: Original strand, 23545563 - 23545654
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||||| | |||||| ||||||||||| |||||||||||||||| |||| |||| || ||||||| || ||||||| |||||||||||||||    
T  23545563 gttttatatttaatattaaatgtacaatttccaatacaaaatttatattttaaacttattaacatgtgcaaatttgcacatgatagaaaaac 23545654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 50352398 - 50352481
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| ||||||||||| ||||||| ||||| ||||||||||||||| || ||||||| | ||||||||||||||    
T  50352398 ttaatacaaaatgttcaagttccaatgcaaaattactattttaaatttcttaacatgtgcaaatttgcatatgatagaaaaacc 50352481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 27756670 - 27756746
Alignment:
Q  345 tacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctttttt 421  Q
    |||||||| ||| ||||| || ||| | ||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  27756670 tacaagtttcaagacaaacttgctactttaaatttcttaacatttgtaaatttgtacatgataaaaaaacctttttt 27756746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 34941376 - 34941457
Alignment:
Q  334 aatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||| |||||||||||||||||| ||||||| ||||| |||| |||||| ||| || ||||| | ||||||||||||||||    
T  34941376 aatacaaaatgtacaagttccaatgcaaaattactattttaaacttcttatcatgtgcaaattcgcacatgatagaaaaacc 34941457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 40049670 - 40049743
Alignment:
Q  348 aagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctttttt 421  Q
    |||||||||| ||||||| ||||| ||||||||||||||| || ||||||| |||| ||||||||||| |||||    
T  40049670 aagttccaatgcaaaattactattttaaatttcttaacatgtgcaaatttgcacataatagaaaaacccttttt 40049743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 39876929 - 39877009
Alignment:
Q  335 atactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||| |||||| ||||||||||| |||| || ||||| ||||||||||||||| || ||||||  ||||||||||||||||    
T  39876929 atacaaaatgttcaagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttacacatgatagaaaaacc 39877009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 414
Target Start/End: Complemental strand, 19838782 - 19838691
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||||| | |||||| ||||||||||||||||||||||||||||||||| ||||    ||||||| || ||||||  |||||||| ||||||    
T  19838782 gttttatatttaatattaaatgtacaagttccaatacaaaatttctattttaaacgggttaacatgtgcaaattttcacatgataaaaaaac 19838691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 4779510 - 4779436
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||||| || || |||| ||||||||| |||||||| |||||||||| || ||||||| |||||||||||||||    
T  4779510 aaatgtataaatttcaatgcaaaatttcaattataaacttcttaacatgtgcaaatttgcacatgatagaaaaac 4779436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 3085741 - 3085785
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaa 376  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||    
T  3085741 ttaatattaaatgtacaagttccaatacaaaatttctattttaaa 3085785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 415
Target Start/End: Complemental strand, 33632293 - 33632202
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| | |||||| |||||||||||||| ||||| ||| |||||||| |||| || ||||||| || ||||| | ||||||||||||||||    
T  33632293 gttttatatttaatattaaatgtacaagtttcaatataaa-tttctattttaaactttttaacatgtgcaaattcgcacatgatagaaaaacc 33632202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 51691445 - 51691520
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||| ||||||||||||| |||| || |||||  |||||||||||||| || ||||||  ||||||||||||||||    
T  51691445 aaatatacaagttccaatgcaaagttactatttaaaatttcttaacatgtgcaaatttacacatgatagaaaaacc 51691520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 332 - 417
Target Start/End: Complemental strand, 16069289 - 16069204
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctt 417  Q
    |||||| ||||||||||| || |||||||||| |||||||  ||| |||||||||| || ||||||| | |||| ||| |||||||    
T  16069289 ttaatattaaatgtacaaatttcaatacaaaaattctatttaaaacttcttaacatgtgcaaatttgcatatgacagataaacctt 16069204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 412
Target Start/End: Complemental strand, 37432941 - 37432868
Alignment:
Q  339 taaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaa 412  Q
    ||||||||||| || ||||||||||||| |||| |||| ||||||||||||| || |||| || | ||||||||    
T  37432941 taaatgtacaaatttcaatacaaaatttttattttaaacttcttaacatatgcaagtttgcacgtaatagaaaa 37432868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 418
Target Start/End: Complemental strand, 29190884 - 29190812
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttt 418  Q
    |||||||||||  |||| || ||| | |||| |||||||||| || ||||||| |||||||||||||||||||    
T  29190884 acaagttccaagtcaaagttactaatttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccttt 29190812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 49181176 - 49181251
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||| ||||||| ||||||||| || ||||| | || |||||||||  || ||||||| ||||||||||||||||    
T  49181176 aaatgcacaagttacaatacaaatttactattttgaacttcttaacaggtgcaaatttgcacatgatagaaaaacc 49181251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 49250403 - 49250336
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    ||||||| ||||| ||| || ||| | |||||||||||||||||| ||||||| ||||| ||||||||    
T  49250403 acaagtttcaatataaacttgctactttaaatttcttaacatatgcaaatttgcacatgttagaaaaa 49250336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 24242979 - 24242917
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaac 385  Q
    |||||| | |||||| ||||||||||| || ||||||||||||| |||| |||| ||||||||    
T  24242979 gttttagatttaatattaaatgtacaaatttcaatacaaaatttatattttaaacttcttaac 24242917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 414
Target Start/End: Original strand, 36971378 - 36971452
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||| ||||||| ||| | ||| || ||||| |||||||||||||||  ||||||||| || ||||||||||||    
T  36971378 aaatgaacaagtttcaagataaagttactattttaaatttcttaacatgcgtaaatttgcacttgatagaaaaac 36971452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 42479966 - 42479894
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaa 412  Q
    ||||| ||||||||||| ||||| ||   ||  ||||||||||||||| || ||||||| |||||||||||||    
T  42479966 aaatgcacaagttccaagacaaatttatcatattaaatttcttaacatgtgcaaatttgcacatgatagaaaa 42479894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 334 - 425
Target Start/End: Original strand, 2566580 - 2566671
Alignment:
Q  334 aatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttttttataa 425  Q
    ||||| ||||||||||||| |||||||||||| ||||| |||||||  |||||| |||||||||| ||||||||||||||||||||||||||    
T  2566580 aatacaaaatgtacaagtttcaatacaaaattactattttaaattttctaacatgtgtaaatttgcacatgatagaaaaaccttttttataa 2566671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 51401536 - 51401619
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| || |||||||||||| |||||||||||    
T  51401536 ttaatattaaatgtacaagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgtacataatagaaaaacc 51401619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 50204490 - 50204587
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttttt 420  Q
    |||||| | |||||| |||||||||| |||||||||||||||||||||| |||| |||||||||| || ||||||| |||||||||||||||| ||||    
T  50204490 gttttatatttaatattaaatgtacaggttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccctttt 50204587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 413
Target Start/End: Complemental strand, 54527797 - 54527707
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    |||||| | |||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| || ||||||| |||| |||||||||    
T  54527797 gttttatatttaatattaaatgtacaagttccaatacaaaatttatattttaaatttcttaacatgtgcaaatttgcacataatagaaaaa 54527707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 332 - 413
Target Start/End: Original strand, 8165742 - 8165823
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    |||||| |||||||||||||||||||||||||||| |||| |||| |||||||||| || ||||||| ||||||||||||||    
T  8165742 ttaatattaaatgtacaagttccaatacaaaatttatattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaa 8165823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 332 - 422
Target Start/End: Original strand, 10307862 - 10307952
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctttttta 422  Q
    ||||||| |||||| ||||||||||| |||| || ||||| ||||||||||||||| || ||||||| |||||||||||||||| ||||||    
T  10307862 ttaatacaaaatgttcaagttccaatgcaaatttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacccttttta 10307952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 323 - 413
Target Start/End: Original strand, 42180139 - 42180229
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    |||||| | |||||| |||||||||||||||||||||||||||| |||| |||| |||||||||| || ||||||  ||||||||||||||    
T  42180139 gttttatatttaatattaaatgtacaagttccaatacaaaatttttattttaaacttcttaacatgtgcaaatttacacatgatagaaaaa 42180229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 2571364 - 2571447
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| ||||||||||| |||| || ||||| ||||||||||||||| || ||||||| ||||||||||||||||    
T  2571364 ttaatacaaaatgttcaagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacc 2571447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 426
Target Start/End: Original strand, 31318737 - 31318831
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttttttataat 426  Q
    |||||| ||||||||||||||||||| ||||||||||||  |||| |||||||||| || ||||||  |||||||||||||| | ||||| ||||    
T  31318737 ttaatattaaatgtacaagttccaatgcaaaatttctatcttaaacttcttaacatgtgcaaattttcacatgatagaaaaaacatttttttaat 31318831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 413
Target Start/End: Complemental strand, 51567908 - 51567821
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    |||||| | |||||| |||||||||||||| |||||||||||||||||| ||||   |||||||| || ||||||| ||||||||||||||    
T  51567908 gttttatatttaatagtaaatgtacaagtttcaatacaaaatttctattttaaa---cttaacatgtgcaaatttgcacatgatagaaaaa 51567821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 45983602 - 45983685
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||| |||||||||||||| ||||| |||||||||||| |||| |||||||| | || ||||||| |||||||| |||||||    
T  45983602 ttaatattaaatgtacaagtttcaatataaaatttctattttaaacttcttaacctgtgcaaatttgcacatgataaaaaaacc 45983685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 411
Target Start/End: Complemental strand, 23803137 - 23803049
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaa 411  Q
    |||||| | ||||||  |||| ||||||||||||| ||||||||||||| |||| |||||||||| || ||||||| | ||||||||||    
T  23803137 gttttatatttaatatgaaatatacaagttccaatgcaaaatttctattttaaacttcttaacatgtgcaaatttgcatatgatagaaa 23803049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 414
Target Start/End: Original strand, 38785967 - 38786058
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||||| | ||||||  ||| |||||||||||||||||||||||||||| |||| ||||||||  ||| || |||| | |||||||||||||    
T  38785967 gttttatatttaatataaaacgtacaagttccaatacaaaatttctattttaaacttcttaactcatgcaagtttggatatgatagaaaaac 38786058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 51618143 - 51618226
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||||||||||||||| |||| || | |||  ||| |||||||||| || ||||||| ||||||||||||||||    
T  51618143 ttaatacaaaatgtacaagttccaatgcaaagttacaatttgaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 51618226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 33474547 - 33474473
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||||| || || |||| ||||||||| |||||||| |||||||||| || ||||||| |||||||||||||||    
T  33474547 aaatgtataaatttcaatgcaaaatttcaattataaacttcttaacatgtgcaaatttgcacatgatagaaaaac 33474473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 46492425 - 46492343
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||||| ||||||||||||| |||| |||| || ||| | ||||||||||||| | || ||||||| |||||||||||||||    
T  46492425 ttaatacaaaatgtacaagtttcaatgcaaagttactactttaaatttcttaacgtgtgaaaatttgcacatgatagaaaaac 46492343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 26499657 - 26499720
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacat 387  Q
    |||||| |||||||| ||||| ||||| ||||||||||||| ||||||| |||||||||||||||    
T  26499657 gttttatacttaatattaaatatacaaattccaatacaaaa-ttctattttaaatttcttaacat 26499720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 35414889 - 35414809
Alignment:
Q  334 aatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||| |||| ||||| |||||||| ||| || ||||| | || |||||||||| |||||||||| |||||||||||||||    
T  35414889 aatacaaaatatacaacttccaatataaagttactattttgaacttcttaacatgtgtaaatttgcacatgatagaaaaac 35414809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 40930170 - 40930234
Alignment:
Q  355 aatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacctttt 419  Q
    |||| |||||||||||| |||| |||||||||| || ||||||| ||||||||||||||| ||||    
T  40930170 aatataaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacttttt 40930234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 12515556 - 12515473
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||||| |||||| |||||||| || |||| || ||||| ||||||| ||||||| || ||||||  ||||||||||||||||    
T  12515556 ttaatacaaaatgttcaagttcctatgcaaagttactattttaaattttttaacatgtgcaaatttacacatgatagaaaaacc 12515473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 15269234 - 15269160
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||||| || || |||| |||||||||||||||||| |||||||||| || ||||||  | |||||||||||||    
T  15269234 aaatgtataaatttcaatgcaaaatttctattataaacttcttaacatgtgcaaatttacatatgatagaaaaac 15269160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 420
Target Start/End: Original strand, 23523050 - 23523130
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttttt 420  Q
    ||||| |||||||||||  ||||||| | | | |||| |||||||||| || ||||||| |||||||||||||||| ||||    
T  23523050 aaatgcacaagttccaagtcaaaattaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccctttt 23523130  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 415
Target Start/End: Complemental strand, 36426483 - 36426408
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||| |||||||||||  ||||||| | | | |||| |||||||||| |||||||||  ||||||||||||||||    
T  36426483 aaatgcacaagttccaagtcaaaattaccactttaaacttcttaacatgtgtaaatttacacatgatagaaaaacc 36426408  T

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Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 38389551 - 38389626
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    ||||| |||||||||||  ||||||| | | | |||| |||||||||| || ||||||| ||||||||||||||||    
T  38389551 aaatgcacaagttccaagtcaaaattaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 38389626  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 397
Target Start/End: Original strand, 38277448 - 38277494
Alignment:
Q  351 ttccaatacaaaatttctattataaatttcttaacatatgtaaattt 397  Q
    ||||||||||||||||||||| |||| |||||||||| || ||||||    
T  38277448 ttccaatacaaaatttctattttaaacttcttaacatgtgcaaattt 38277494  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 1569264 - 1569191
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    ||||| ||||||||||||||||| ||  |||| |||| |||||||||| |   ||||| |||||||||||||||    
T  1569264 aaatgaacaagttccaatacaaagttattattttaaacttcttaacatgtacgaatttatacatgatagaaaaa 1569191  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 413
Target Start/End: Original strand, 1746250 - 1746282
Alignment:
Q  381 ttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    ||||||| |||||||||||||||||||||||||    
T  1746250 ttaacatgtgtaaatttgtacatgatagaaaaa 1746282  T

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Target: scaffold0229 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 24609 - 24527
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    |||||||||||||| ||| ||||||||||||||| ||||| |||||||||| |||| |||||||||| |||||||||||||||    
T  24609 ttaatactaaatgttcaaattccaatacaaaattactattttaaatttctttacatgtgtaaatttgcacatgatagaaaaac 24527  T

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Target: scaffold0074 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 45571 - 45497
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||| ||||||||| |||||| ||| ||||| |||| ||||| ||||||||||||||| |||||||||||||||    
T  45571 aaatgcacaagttccgatacaatattactattttaaacttctttacatatgtaaatttgcacatgatagaaaaac 45497  T

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Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 94100 - 94018
Alignment:
Q  332 ttaatactaaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||||| ||||||| ||||||||||  ||| ||  ||||  ||| ||||||||||||| ||||||| |||||||||||||||    
T  94100 ttaatacaaaatgtataagttccaatgtaaagttagtatttaaaacttcttaacatatgcaaatttgcacatgatagaaaaac 94018  T

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Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 13749 - 13696
Alignment:
Q  323 gttttacacttaatactaaatgtacaagttccaatacaaaatttctattataaa 376  Q
    |||||| | |||||| | ||||||||||||||||||||||||||||||| ||||    
T  13749 gttttatatttaatatttaatgtacaagttccaatacaaaatttctattttaaa 13696  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 13216 - 13267
Alignment:
Q  367 ctattataaatttcttaacatatgtaaatttgtacatgatagaaaaaccttt 418  Q
    ||||| |||| |||||||||| || ||||||| |||||||||||||||||||    
T  13216 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccttt 13267  T

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Target: scaffold0111 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 414
Target Start/End: Original strand, 41094 - 41160
Alignment:
Q  348 aagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaac 414  Q
    ||||| ||||||||||||  |||| |||| ||||||||||||  ||||||  |||||||||||||||    
T  41094 aagtttcaatacaaaattattattttaaacttcttaacatatacaaatttacacatgatagaaaaac 41160  T

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Target: scaffold0149 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 413
Target Start/End: Original strand, 22576 - 22641
Alignment:
Q  348 aagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaa 413  Q
    |||||| || ||||||||   ||| ||||||||||||||| || |||||||||||| |||||||||    
T  22576 aagttctaagacaaaattaacattttaaatttcttaacatgtgcaaatttgtacataatagaaaaa 22641  T

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Target: scaffold0061 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 52847 - 52778
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||||||||  |||| || ||| | |||| |||||||||| || ||||||| ||||||||||||||||    
T  52847 acaagttccaagtcaaagttactactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 52778  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 415
Target Start/End: Original strand, 145787 - 145856
Alignment:
Q  346 acaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaaacc 415  Q
    |||||||||||  |||| || ||| | |||| |||||||||| || ||||||| ||||||||||||||||    
T  145787 acaagttccaagtcaaagttactactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 145856  T

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Target: scaffold0618 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 8488 - 8416
Alignment:
Q  340 aaatgtacaagttccaatacaaaatttctattataaatttcttaacatatgtaaatttgtacatgatagaaaa 412  Q
    ||||| |||||||| ||  |||| || ||| | |||||||||||||||||| ||||||  |||||||||||||    
T  8488 aaatgcacaagttctaaatcaaagttactactttaaatttcttaacatatgcaaatttacacatgatagaaaa 8416  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 158969 - 159005
Alignment:
Q  381 ttaacatatgtaaatttgtacatgatagaaaaacctt 417  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  158969 ttaacatgtgtaaatttgtacatgatagaacaacctt 159005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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