View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9324-LTR4-TNT-insertion-10 (Length: 423)
Name: F9324-LTR4-TNT-insertion-10
Description: F9324-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9324-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 6 - 181
Target Start/End: Original strand, 33542735 - 33542910
Alignment:
| Q |
6 |
cactttcatgcttcacttcaacccttatcacaagctaacttgtgtttagaagggaagagaaaagctgacacataggaaaatagtttctatgcgcttctgt |
105 |
Q |
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| T |
33542735 |
cactttcatgcttcacttcaacccttatcacaagctaacttgtgtttagaagggaagagaaaagctgacacataggaaaatagtttctatgcgcttctgt |
33542834 |
T |
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| Q |
106 |
aggatttggagacttgtagttgtccactttctgaatatcttttggattttttccattatggtgtgaggtatagaag |
181 |
Q |
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| T |
33542835 |
aggatttggagacttgtagttgtccactttctgaatatcttttggattttttccattatggtgtgaggtatagaag |
33542910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 245 - 413
Target Start/End: Original strand, 33542974 - 33543142
Alignment:
| Q |
245 |
caaaaaataaattggtttatttgtggaagattcattgtgagttgtttggtgatcttggaagcaagtgaaaaatatctgctactaaaagtctaaaacaatc |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33542974 |
caaaaaataaattggtttatttgtggaagattcattgtgagttgtttggtgatcttggaagcaagtgaaaaatatctgctactaaaagtctaaaacaatc |
33543073 |
T |
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| Q |
345 |
aaatttacttggctttggttgaagcagaaagaaaaacactttagtataaacactacttaactcatatta |
413 |
Q |
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| T |
33543074 |
aaatttacttggctttggttgaagcagaaagaaaaacactttagtataaacactacttaactcatatta |
33543142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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