View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9324-LTR4-TNT-insertion-6 (Length: 787)
Name: F9324-LTR4-TNT-insertion-6
Description: F9324-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9324-LTR4-TNT-insertion-6 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 682; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 8 - 782
Target Start/End: Complemental strand, 4222590 - 4221816
Alignment:
| Q |
8 |
aatcagagcaaagaagcaacaaaagagtagtctaatggctatactcgcacatgttaagtgtggagaaatgggaaatcgaaaccctagaccatgtacatcg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4222590 |
aatcagagcaaagaagcaacaaaagagtagtctaatggctatactcgcacatgttaagtgtggagaaatgggaaatcgaaaccctagaccatgtacatcg |
4222491 |
T |
|
| Q |
108 |
caaaatgaaatttagtagggtggattatgttgtgtggaaattgcatgaatcaaataggagcttcactcaagaaattgagtcactagaactagcaaagagt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4222490 |
caaaatgaaatttagtagggtggattatgttgtgtggaaattgcatgaatcaaataggagcttcactcaagaaattgagtcactagaactagcaaagagt |
4222391 |
T |
|
| Q |
208 |
ggtccagagcattcaattgcggtgcacggataacatacacatatttcttattaagtatcaccttcgttcttaaatatatatcttccttgcaaaaacaatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4222390 |
ggtccagagcattcaattgcggtgcacggataacatacacatatttcttattaagtatcaccttcgttcttaaatatatatcttccttgcaaaaacaatt |
4222291 |
T |
|
| Q |
308 |
ctcctagtattagnnnnnnnnnnnnnnnncaaattacaacatacaattatttatttatttatttcaagtatacaaatgtagttaacactatcaatgtctn |
407 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4222290 |
ctcctagtattagttttttttttctttttcaaattacaacatacaattatttatttatttatttcaagtatacaaatgtagttaacactatcaatgtcta |
4222191 |
T |
|
| Q |
408 |
nnnnnntgaatgaaaaagtttgttgtagcacccgtcttattaacttaaaccttcaggacattttttaaaccttacaaagtgtaagcaattattttttcta |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4222190 |
agaaaatgaatgaaaaagtttgttgtagcacccgtcttattaacttaaaccttcaggacattttttaaaccttacaaagtgtaagcaattattttttcta |
4222091 |
T |
|
| Q |
508 |
aaagtcaaatatattgattttcgatgcattgaatacatgtannnnnnnnaaaaattactcacttatagtttttaaaaagtgttctaagacacttcttaac |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4222090 |
aaagtcaaatatattgattttcgatgcattgaatacatgtattttttttaaaaattactcacttatagtttttaaaaagtgttctaagacacttcttaac |
4221991 |
T |
|
| Q |
608 |
atttcccaaaaatatttgtagagctggtccttctaatatattgtttctttctattaaactcatattttttgttttgagaatgacattcactgtctgacac |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4221990 |
atttcccaaaaatatttgtagagctggtccttctaatatattgtttctttctattaaactcatattttttgttttgagaatgacattcactgtctgacac |
4221891 |
T |
|
| Q |
708 |
atccttggatcaacataaaaatattacaatctatctctatgtaaattctgcttgccactttggtccaaaacatta |
782 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4221890 |
atccttggatcaacataaaaatattacaatctatctctatgtaaattctgcttgccactttggtccaaaacatta |
4221816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 494 - 544
Target Start/End: Original strand, 48137804 - 48137854
Alignment:
| Q |
494 |
aattattttttctaaaagtcaaatatattgattttcgatgcattgaataca |
544 |
Q |
| |
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||||||||| | ||||||||||||| ||||||||||||||||||| |||| |
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| T |
48137804 |
aattattttataaaaaagtcaaatattttgattttcgatgcattgattaca |
48137854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 544
Target Start/End: Original strand, 42493743 - 42493780
Alignment:
| Q |
507 |
aaaagtcaaatatattgattttcgatgcattgaataca |
544 |
Q |
| |
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||||||||||||| ||||||||||||||||||| |||| |
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| T |
42493743 |
aaaagtcaaatattttgattttcgatgcattgattaca |
42493780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 545
Target Start/End: Original strand, 28434544 - 28434582
Alignment:
| Q |
507 |
aaaagtcaaatatattgattttcgatgcattgaatacat |
545 |
Q |
| |
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||||||||||||| ||||||||||||||||||| ||||| |
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| T |
28434544 |
aaaagtcaaatattttgattttcgatgcattgattacat |
28434582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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